Hb_011926_040

Information

Type -
Description -
Location Contig11926: 73623-80749
Sequence    

Annotation

kegg
ID rcu:RCOM_0456610
description hypothetical protein
nr
ID XP_012076080.1
description PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067KQ67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11916 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05693: 73735-80749 , PASA_asmbl_05694: 77326-77510
cDNA
(Sanger)
(ID:Location)		 012_K06.ab1: 73735-76398 , 028_D10.ab1: 73811-75541

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011926_040 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
2 Hb_009913_040 0.0838877426 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
3 Hb_000399_060 0.0885127657 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
4 Hb_006006_060 0.0938490654 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
5 Hb_000173_060 0.100784738 - - Dual specificity protein phosphatase, putative [Ricinus communis]
6 Hb_174865_040 0.1087939103 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
7 Hb_000638_070 0.1093084848 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
8 Hb_001049_150 0.1095974063 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
9 Hb_000665_190 0.1099248968 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004306_110 0.1122228461 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
11 Hb_000300_090 0.1146068693 - - catalytic, putative [Ricinus communis]
12 Hb_000920_310 0.117097248 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_003058_100 0.1171701927 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
14 Hb_001491_030 0.1182419529 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
15 Hb_012339_010 0.1191081669 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000094_290 0.1201740568 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
17 Hb_005062_060 0.1202755165 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
18 Hb_000665_180 0.1203744755 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
19 Hb_022693_130 0.1209348906 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_003540_080 0.1210405232 - - leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011926_040 Hb_011926_040 Hb_009913_040 Hb_009913_040 Hb_011926_040--Hb_009913_040 Hb_000399_060 Hb_000399_060 Hb_011926_040--Hb_000399_060 Hb_006006_060 Hb_006006_060 Hb_011926_040--Hb_006006_060 Hb_000173_060 Hb_000173_060 Hb_011926_040--Hb_000173_060 Hb_174865_040 Hb_174865_040 Hb_011926_040--Hb_174865_040 Hb_000638_070 Hb_000638_070 Hb_011926_040--Hb_000638_070 Hb_009913_040--Hb_000173_060 Hb_004306_110 Hb_004306_110 Hb_009913_040--Hb_004306_110 Hb_002164_020 Hb_002164_020 Hb_009913_040--Hb_002164_020 Hb_000139_300 Hb_000139_300 Hb_009913_040--Hb_000139_300 Hb_008025_010 Hb_008025_010 Hb_009913_040--Hb_008025_010 Hb_000320_340 Hb_000320_340 Hb_000399_060--Hb_000320_340 Hb_000014_040 Hb_000014_040 Hb_000399_060--Hb_000014_040 Hb_000665_180 Hb_000665_180 Hb_000399_060--Hb_000665_180 Hb_001157_230 Hb_001157_230 Hb_000399_060--Hb_001157_230 Hb_008406_180 Hb_008406_180 Hb_000399_060--Hb_008406_180 Hb_000200_350 Hb_000200_350 Hb_006006_060--Hb_000200_350 Hb_022693_130 Hb_022693_130 Hb_006006_060--Hb_022693_130 Hb_000388_150 Hb_000388_150 Hb_006006_060--Hb_000388_150 Hb_010344_030 Hb_010344_030 Hb_006006_060--Hb_010344_030 Hb_010984_020 Hb_010984_020 Hb_006006_060--Hb_010984_020 Hb_000094_290 Hb_000094_290 Hb_000173_060--Hb_000094_290 Hb_000622_350 Hb_000622_350 Hb_000173_060--Hb_000622_350 Hb_003058_100 Hb_003058_100 Hb_000173_060--Hb_003058_100 Hb_000300_090 Hb_000300_090 Hb_000173_060--Hb_000300_090 Hb_156850_100 Hb_156850_100 Hb_174865_040--Hb_156850_100 Hb_042083_040 Hb_042083_040 Hb_174865_040--Hb_042083_040 Hb_160271_010 Hb_160271_010 Hb_174865_040--Hb_160271_010 Hb_174865_040--Hb_022693_130 Hb_073973_120 Hb_073973_120 Hb_174865_040--Hb_073973_120 Hb_174865_040--Hb_000388_150 Hb_000638_070--Hb_000665_180 Hb_011486_060 Hb_011486_060 Hb_000638_070--Hb_011486_060 Hb_001976_030 Hb_001976_030 Hb_000638_070--Hb_001976_030 Hb_001663_040 Hb_001663_040 Hb_000638_070--Hb_001663_040 Hb_000395_110 Hb_000395_110 Hb_000638_070--Hb_000395_110 Hb_000417_390 Hb_000417_390 Hb_000638_070--Hb_000417_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0764 9.10854 49.3541 88.5484 22.7732 30.3502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.2324 15.2231 21.7148 17.4166 70.342

CAGE analysis