Hb_011928_010

Information

Type -
Description -
Location Contig11928: 9262-19053
Sequence    

Annotation

kegg
ID pmum:103330432
description cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like
nr
ID -
description -
swissprot
ID P51132
description Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011928_010 0.0 - - -
2 Hb_000076_170 0.2934462119 - - hypothetical protein JCGZ_00832 [Jatropha curcas]
3 Hb_000982_040 0.3019121685 - - conserved hypothetical protein [Ricinus communis]
4 Hb_170935_010 0.3039397978 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
5 Hb_001524_100 0.3326672526 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
6 Hb_004117_300 0.3443904005 - - -
7 Hb_000917_140 0.3444070032 - - -
8 Hb_181476_010 0.34465765 - - -
9 Hb_002240_100 0.3481571381 - - -
10 Hb_038005_010 0.3499062788 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
11 Hb_012754_040 0.3500547675 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
12 Hb_002120_020 0.3536820778 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
13 Hb_004908_010 0.3538566076 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
14 Hb_184484_010 0.3555733102 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_027846_010 0.3577749804 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_031862_280 0.3587144497 - - hypothetical protein VITISV_012289 [Vitis vinifera]
17 Hb_002595_020 0.3611908154 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
18 Hb_003847_010 0.3661902408 - - -
19 Hb_000608_070 0.3671989755 - - -
20 Hb_000380_200 0.3675470707 - - -

Gene co-expression network

sample Hb_011928_010 Hb_011928_010 Hb_000076_170 Hb_000076_170 Hb_011928_010--Hb_000076_170 Hb_000982_040 Hb_000982_040 Hb_011928_010--Hb_000982_040 Hb_170935_010 Hb_170935_010 Hb_011928_010--Hb_170935_010 Hb_001524_100 Hb_001524_100 Hb_011928_010--Hb_001524_100 Hb_004117_300 Hb_004117_300 Hb_011928_010--Hb_004117_300 Hb_000917_140 Hb_000917_140 Hb_011928_010--Hb_000917_140 Hb_002188_020 Hb_002188_020 Hb_000076_170--Hb_002188_020 Hb_003117_050 Hb_003117_050 Hb_000076_170--Hb_003117_050 Hb_000076_170--Hb_001524_100 Hb_136872_010 Hb_136872_010 Hb_000076_170--Hb_136872_010 Hb_004266_010 Hb_004266_010 Hb_000076_170--Hb_004266_010 Hb_000982_040--Hb_000917_140 Hb_000982_040--Hb_004117_300 Hb_181476_010 Hb_181476_010 Hb_000982_040--Hb_181476_010 Hb_038005_010 Hb_038005_010 Hb_000982_040--Hb_038005_010 Hb_002120_020 Hb_002120_020 Hb_000982_040--Hb_002120_020 Hb_184484_010 Hb_184484_010 Hb_000982_040--Hb_184484_010 Hb_004908_010 Hb_004908_010 Hb_170935_010--Hb_004908_010 Hb_031862_280 Hb_031862_280 Hb_170935_010--Hb_031862_280 Hb_002595_020 Hb_002595_020 Hb_170935_010--Hb_002595_020 Hb_000608_070 Hb_000608_070 Hb_170935_010--Hb_000608_070 Hb_089610_010 Hb_089610_010 Hb_170935_010--Hb_089610_010 Hb_004246_010 Hb_004246_010 Hb_170935_010--Hb_004246_010 Hb_002240_100 Hb_002240_100 Hb_001524_100--Hb_002240_100 Hb_001226_080 Hb_001226_080 Hb_001524_100--Hb_001226_080 Hb_003847_010 Hb_003847_010 Hb_001524_100--Hb_003847_010 Hb_000174_280 Hb_000174_280 Hb_001524_100--Hb_000174_280 Hb_005803_020 Hb_005803_020 Hb_001524_100--Hb_005803_020 Hb_152439_010 Hb_152439_010 Hb_001524_100--Hb_152439_010 Hb_004117_300--Hb_000917_140 Hb_004117_300--Hb_181476_010 Hb_004117_300--Hb_038005_010 Hb_004117_300--Hb_002120_020 Hb_004117_300--Hb_184484_010 Hb_027846_010 Hb_027846_010 Hb_004117_300--Hb_027846_010 Hb_000917_140--Hb_181476_010 Hb_000917_140--Hb_038005_010 Hb_000917_140--Hb_002120_020 Hb_000917_140--Hb_184484_010 Hb_000917_140--Hb_027846_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.047807 0.0454971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.115478 0

CAGE analysis