Hb_011928_030

Information

Type -
Description -
Location Contig11928: 20996-21991
Sequence    

Annotation

kegg
ID rcu:RCOM_0547710
description hypothetical protein
nr
ID XP_012065070.1
description PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LI53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05722 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011928_030 0.0 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
2 Hb_000347_370 0.0995588143 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
3 Hb_002248_090 0.1216312806 - - metallothionein 3-like protein [Hevea brasiliensis]
4 Hb_024857_010 0.1220870397 - - glutaredoxin 2.1 [Hevea brasiliensis]
5 Hb_001691_190 0.1293557013 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000270_010 0.1296080453 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004267_070 0.1321898325 - - latex allene oxide synthase [Hevea brasiliensis]
8 Hb_133646_010 0.1332504998 - - hypothetical protein RCOM_1044030 [Ricinus communis]
9 Hb_007305_040 0.1339485634 - - Nodulin-26, putative [Ricinus communis]
10 Hb_001131_100 0.1389079501 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
11 Hb_000431_180 0.1404770395 - - PREDICTED: peroxidase 55 [Jatropha curcas]
12 Hb_004531_010 0.1429953628 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
13 Hb_002042_190 0.1456983005 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
14 Hb_005147_020 0.1457001835 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
15 Hb_001168_100 0.1468360049 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
16 Hb_002239_030 0.1479875699 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
17 Hb_000111_150 0.14929376 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
18 Hb_000123_310 0.1549333739 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
19 Hb_000101_140 0.1560738032 - - amino acid transporter, putative [Ricinus communis]
20 Hb_002236_020 0.1561149121 - - PREDICTED: nephrocystin-3 [Jatropha curcas]

Gene co-expression network

sample Hb_011928_030 Hb_011928_030 Hb_000347_370 Hb_000347_370 Hb_011928_030--Hb_000347_370 Hb_002248_090 Hb_002248_090 Hb_011928_030--Hb_002248_090 Hb_024857_010 Hb_024857_010 Hb_011928_030--Hb_024857_010 Hb_001691_190 Hb_001691_190 Hb_011928_030--Hb_001691_190 Hb_000270_010 Hb_000270_010 Hb_011928_030--Hb_000270_010 Hb_004267_070 Hb_004267_070 Hb_011928_030--Hb_004267_070 Hb_001168_100 Hb_001168_100 Hb_000347_370--Hb_001168_100 Hb_000347_370--Hb_004267_070 Hb_007383_050 Hb_007383_050 Hb_000347_370--Hb_007383_050 Hb_007305_040 Hb_007305_040 Hb_000347_370--Hb_007305_040 Hb_133646_010 Hb_133646_010 Hb_000347_370--Hb_133646_010 Hb_002239_030 Hb_002239_030 Hb_002248_090--Hb_002239_030 Hb_000101_140 Hb_000101_140 Hb_002248_090--Hb_000101_140 Hb_000521_210 Hb_000521_210 Hb_002248_090--Hb_000521_210 Hb_000431_030 Hb_000431_030 Hb_002248_090--Hb_000431_030 Hb_001073_060 Hb_001073_060 Hb_002248_090--Hb_001073_060 Hb_002236_020 Hb_002236_020 Hb_024857_010--Hb_002236_020 Hb_087468_010 Hb_087468_010 Hb_024857_010--Hb_087468_010 Hb_000656_370 Hb_000656_370 Hb_024857_010--Hb_000656_370 Hb_000252_190 Hb_000252_190 Hb_024857_010--Hb_000252_190 Hb_024857_010--Hb_002239_030 Hb_024857_010--Hb_000101_140 Hb_000170_230 Hb_000170_230 Hb_001691_190--Hb_000170_230 Hb_131591_010 Hb_131591_010 Hb_001691_190--Hb_131591_010 Hb_001691_190--Hb_000270_010 Hb_029866_140 Hb_029866_140 Hb_001691_190--Hb_029866_140 Hb_004586_380 Hb_004586_380 Hb_001691_190--Hb_004586_380 Hb_001691_190--Hb_133646_010 Hb_017417_020 Hb_017417_020 Hb_000270_010--Hb_017417_020 Hb_000431_180 Hb_000431_180 Hb_000270_010--Hb_000431_180 Hb_069232_010 Hb_069232_010 Hb_000270_010--Hb_069232_010 Hb_001131_100 Hb_001131_100 Hb_000270_010--Hb_001131_100 Hb_004267_070--Hb_001168_100 Hb_004267_070--Hb_007383_050 Hb_001411_150 Hb_001411_150 Hb_004267_070--Hb_001411_150 Hb_000210_150 Hb_000210_150 Hb_004267_070--Hb_000210_150 Hb_089140_020 Hb_089140_020 Hb_004267_070--Hb_089140_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0222353 17.6758 1.0289 4.99816 0.0208417 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10186 0.040056 0 2.88368 0.163842

CAGE analysis