Hb_011930_010

Information

Type -
Description -
Location Contig11930: 8409-11549
Sequence    

Annotation

kegg
ID rcu:RCOM_0698770
description hypothetical protein
nr
ID XP_012091960.1
description PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
swissprot
ID Q1H5C9
description Outer envelope pore protein 24A, chloroplastic OS=Arabidopsis thaliana GN=OEP24A PE=1 SV=1
trembl
ID A0A067JP07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05698: 8458-11494
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_010 0.0 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
2 Hb_005147_110 0.0903360182 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
3 Hb_024399_010 0.0921404402 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
4 Hb_011609_030 0.0939231167 - - conserved hypothetical protein 13 [Hevea brasiliensis]
5 Hb_160818_010 0.0963081127 - - -
6 Hb_000714_020 0.0978195249 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
7 Hb_005333_020 0.099186827 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
8 Hb_005314_010 0.0995019572 - - nucleotide binding protein, putative [Ricinus communis]
9 Hb_005725_070 0.1012399562 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005144_040 0.1028379888 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
11 Hb_001956_050 0.1040140961 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
12 Hb_009404_010 0.1044836677 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
13 Hb_002169_010 0.1083354031 - - PREDICTED: la-related protein 6B [Jatropha curcas]
14 Hb_000186_040 0.1095128954 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011496_010 0.1096232432 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
16 Hb_005016_030 0.1101835357 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
17 Hb_002783_230 0.110341672 - - neutral/alkaline invertase [Manihot esculenta]
18 Hb_001009_050 0.1106184233 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
19 Hb_005754_020 0.1112504579 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
20 Hb_002044_090 0.1116387922 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011930_010 Hb_011930_010 Hb_005147_110 Hb_005147_110 Hb_011930_010--Hb_005147_110 Hb_024399_010 Hb_024399_010 Hb_011930_010--Hb_024399_010 Hb_011609_030 Hb_011609_030 Hb_011930_010--Hb_011609_030 Hb_160818_010 Hb_160818_010 Hb_011930_010--Hb_160818_010 Hb_000714_020 Hb_000714_020 Hb_011930_010--Hb_000714_020 Hb_005333_020 Hb_005333_020 Hb_011930_010--Hb_005333_020 Hb_008725_250 Hb_008725_250 Hb_005147_110--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005147_110--Hb_004310_060 Hb_001341_030 Hb_001341_030 Hb_005147_110--Hb_001341_030 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_005147_110--Hb_018663_020 Hb_000373_270 Hb_000373_270 Hb_005147_110--Hb_000373_270 Hb_005314_010 Hb_005314_010 Hb_024399_010--Hb_005314_010 Hb_005725_070 Hb_005725_070 Hb_024399_010--Hb_005725_070 Hb_000481_010 Hb_000481_010 Hb_024399_010--Hb_000481_010 Hb_002818_040 Hb_002818_040 Hb_024399_010--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_024399_010--Hb_000340_510 Hb_011609_030--Hb_000714_020 Hb_004232_010 Hb_004232_010 Hb_011609_030--Hb_004232_010 Hb_001623_370 Hb_001623_370 Hb_011609_030--Hb_001623_370 Hb_005741_020 Hb_005741_020 Hb_011609_030--Hb_005741_020 Hb_001956_120 Hb_001956_120 Hb_011609_030--Hb_001956_120 Hb_000491_080 Hb_000491_080 Hb_160818_010--Hb_000491_080 Hb_002169_010 Hb_002169_010 Hb_160818_010--Hb_002169_010 Hb_001776_080 Hb_001776_080 Hb_160818_010--Hb_001776_080 Hb_000320_440 Hb_000320_440 Hb_160818_010--Hb_000320_440 Hb_011496_010 Hb_011496_010 Hb_160818_010--Hb_011496_010 Hb_160818_010--Hb_005314_010 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_153150_010 Hb_153150_010 Hb_005333_020--Hb_153150_010 Hb_000465_310 Hb_000465_310 Hb_005333_020--Hb_000465_310 Hb_005333_020--Hb_005147_110 Hb_001975_070 Hb_001975_070 Hb_005333_020--Hb_001975_070 Hb_000640_210 Hb_000640_210 Hb_005333_020--Hb_000640_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.601 42.3458 14.0488 8.68576 91.6173 100.179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.4696 42.0693 51.1802 17.6612 2.79442

CAGE analysis