Hb_011930_020

Information

Type -
Description -
Location Contig11930: 11920-16714
Sequence    

Annotation

kegg
ID rcu:RCOM_0698780
description hypothetical protein
nr
ID XP_012091961.1
description PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
swissprot
ID Q94AX2
description Protein PTST, chloroplastic OS=Arabidopsis thaliana GN=PTST PE=1 SV=1
trembl
ID A0A067JML9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21711 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05699: 12175-12408 , PASA_asmbl_05700: 13036-14198 , PASA_asmbl_05702: 14208-16479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_020 0.0 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
2 Hb_007007_120 0.0727728966 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
3 Hb_007590_020 0.0758662716 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
4 Hb_012395_230 0.0768887923 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
5 Hb_004837_180 0.080952864 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
6 Hb_000230_400 0.0833539191 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_003647_140 0.0839718976 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
8 Hb_003929_280 0.0839794419 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
9 Hb_000059_380 0.0839833427 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
10 Hb_004052_080 0.0842091764 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004970_190 0.0861476369 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
12 Hb_007254_020 0.0867723908 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
13 Hb_003513_010 0.0870558622 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
14 Hb_002205_230 0.0874426079 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
15 Hb_004236_050 0.0887921247 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
16 Hb_002217_110 0.0888161315 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
17 Hb_002184_110 0.0891100777 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
18 Hb_001247_250 0.089693174 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
19 Hb_000317_050 0.0912416583 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
20 Hb_003142_030 0.0913016395 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_011930_020 Hb_011930_020 Hb_007007_120 Hb_007007_120 Hb_011930_020--Hb_007007_120 Hb_007590_020 Hb_007590_020 Hb_011930_020--Hb_007590_020 Hb_012395_230 Hb_012395_230 Hb_011930_020--Hb_012395_230 Hb_004837_180 Hb_004837_180 Hb_011930_020--Hb_004837_180 Hb_000230_400 Hb_000230_400 Hb_011930_020--Hb_000230_400 Hb_003647_140 Hb_003647_140 Hb_011930_020--Hb_003647_140 Hb_004052_080 Hb_004052_080 Hb_007007_120--Hb_004052_080 Hb_003428_010 Hb_003428_010 Hb_007007_120--Hb_003428_010 Hb_002876_230 Hb_002876_230 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_003513_010 Hb_003513_010 Hb_007007_120--Hb_003513_010 Hb_000339_040 Hb_000339_040 Hb_007007_120--Hb_000339_040 Hb_007590_020--Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_007590_020--Hb_005867_070 Hb_001089_030 Hb_001089_030 Hb_007590_020--Hb_001089_030 Hb_004236_050 Hb_004236_050 Hb_007590_020--Hb_004236_050 Hb_005730_040 Hb_005730_040 Hb_007590_020--Hb_005730_040 Hb_001225_040 Hb_001225_040 Hb_007590_020--Hb_001225_040 Hb_004970_190 Hb_004970_190 Hb_012395_230--Hb_004970_190 Hb_000053_110 Hb_000053_110 Hb_012395_230--Hb_000053_110 Hb_008642_040 Hb_008642_040 Hb_012395_230--Hb_008642_040 Hb_002780_020 Hb_002780_020 Hb_012395_230--Hb_002780_020 Hb_000883_020 Hb_000883_020 Hb_012395_230--Hb_000883_020 Hb_012395_230--Hb_003513_010 Hb_004837_180--Hb_005867_070 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_004837_180--Hb_001225_040 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004837_180--Hb_004236_050 Hb_005588_080 Hb_005588_080 Hb_000230_400--Hb_005588_080 Hb_000375_390 Hb_000375_390 Hb_000230_400--Hb_000375_390 Hb_000292_100 Hb_000292_100 Hb_000230_400--Hb_000292_100 Hb_001623_270 Hb_001623_270 Hb_000230_400--Hb_001623_270 Hb_000059_380 Hb_000059_380 Hb_000230_400--Hb_000059_380 Hb_000035_090 Hb_000035_090 Hb_000230_400--Hb_000035_090 Hb_014834_150 Hb_014834_150 Hb_003647_140--Hb_014834_150 Hb_000373_050 Hb_000373_050 Hb_003647_140--Hb_000373_050 Hb_003938_090 Hb_003938_090 Hb_003647_140--Hb_003938_090 Hb_000976_120 Hb_000976_120 Hb_003647_140--Hb_000976_120 Hb_003647_140--Hb_003513_010 Hb_001946_400 Hb_001946_400 Hb_003647_140--Hb_001946_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.04409 8.66716 10.3388 5.11708 6.4021 7.84312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.40971 9.23957 6.03842 3.99449 9.93906

CAGE analysis