Hb_011930_110

Information

Type -
Description -
Location Contig11930: 97256-99085
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10010g
description POPTRDRAFT_779431; hypothetical protein
nr
ID XP_012092455.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
swissprot
ID Q0WQW5
description Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2
trembl
ID A0A067JBR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21717 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05715: 97221-99164
cDNA
(Sanger)
(ID:Location)		 020_M04.ab1: 97221-97996

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
2 Hb_004440_040 0.0741971164 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_002263_040 0.0831407402 - - carbon catabolite repressor protein, putative [Ricinus communis]
4 Hb_001754_030 0.090155984 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
5 Hb_001728_050 0.0917484503 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
6 Hb_000103_100 0.0940705353 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
7 Hb_000803_070 0.0967365348 - - PREDICTED: protein TRAUCO [Jatropha curcas]
8 Hb_008695_090 0.0971426133 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
9 Hb_001766_020 0.0986404727 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
10 Hb_004357_020 0.1000611014 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
11 Hb_002329_020 0.1003349286 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
12 Hb_010417_070 0.1007234686 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
13 Hb_000347_120 0.1008208269 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
14 Hb_003411_110 0.1011754115 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
15 Hb_002411_030 0.10167424 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
16 Hb_000061_030 0.1023672241 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
17 Hb_010738_010 0.1027915236 - - PREDICTED: B2 protein [Jatropha curcas]
18 Hb_032264_060 0.1030289577 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
19 Hb_009393_220 0.1036746234 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
20 Hb_000796_180 0.1044271606 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]

Gene co-expression network

sample Hb_011930_110 Hb_011930_110 Hb_004440_040 Hb_004440_040 Hb_011930_110--Hb_004440_040 Hb_002263_040 Hb_002263_040 Hb_011930_110--Hb_002263_040 Hb_001754_030 Hb_001754_030 Hb_011930_110--Hb_001754_030 Hb_001728_050 Hb_001728_050 Hb_011930_110--Hb_001728_050 Hb_000103_100 Hb_000103_100 Hb_011930_110--Hb_000103_100 Hb_000803_070 Hb_000803_070 Hb_011930_110--Hb_000803_070 Hb_000347_120 Hb_000347_120 Hb_004440_040--Hb_000347_120 Hb_004440_040--Hb_002263_040 Hb_002636_100 Hb_002636_100 Hb_004440_040--Hb_002636_100 Hb_003055_060 Hb_003055_060 Hb_004440_040--Hb_003055_060 Hb_001766_020 Hb_001766_020 Hb_004440_040--Hb_001766_020 Hb_000442_010 Hb_000442_010 Hb_002263_040--Hb_000442_010 Hb_002798_070 Hb_002798_070 Hb_002263_040--Hb_002798_070 Hb_002263_040--Hb_002636_100 Hb_002783_040 Hb_002783_040 Hb_002263_040--Hb_002783_040 Hb_000061_030 Hb_000061_030 Hb_002263_040--Hb_000061_030 Hb_000977_120 Hb_000977_120 Hb_002263_040--Hb_000977_120 Hb_000809_160 Hb_000809_160 Hb_001754_030--Hb_000809_160 Hb_002477_250 Hb_002477_250 Hb_001754_030--Hb_002477_250 Hb_023226_070 Hb_023226_070 Hb_001754_030--Hb_023226_070 Hb_060094_020 Hb_060094_020 Hb_001754_030--Hb_060094_020 Hb_032264_060 Hb_032264_060 Hb_001754_030--Hb_032264_060 Hb_000723_110 Hb_000723_110 Hb_001754_030--Hb_000723_110 Hb_001728_050--Hb_000803_070 Hb_004357_020 Hb_004357_020 Hb_001728_050--Hb_004357_020 Hb_001751_140 Hb_001751_140 Hb_001728_050--Hb_001751_140 Hb_001247_130 Hb_001247_130 Hb_001728_050--Hb_001247_130 Hb_003927_040 Hb_003927_040 Hb_001728_050--Hb_003927_040 Hb_001728_050--Hb_032264_060 Hb_003633_070 Hb_003633_070 Hb_000103_100--Hb_003633_070 Hb_008695_110 Hb_008695_110 Hb_000103_100--Hb_008695_110 Hb_000796_180 Hb_000796_180 Hb_000103_100--Hb_000796_180 Hb_003117_020 Hb_003117_020 Hb_000103_100--Hb_003117_020 Hb_010738_010 Hb_010738_010 Hb_000103_100--Hb_010738_010 Hb_001767_140 Hb_001767_140 Hb_000103_100--Hb_001767_140 Hb_000861_080 Hb_000861_080 Hb_000803_070--Hb_000861_080 Hb_000803_070--Hb_032264_060 Hb_003929_280 Hb_003929_280 Hb_000803_070--Hb_003929_280 Hb_000803_070--Hb_001751_140 Hb_000803_070--Hb_003927_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.977016 1.4095 0.886604 0.328051 0.542478 0.659504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.447813 0.422777 0.662899 0.374816 0.492161

CAGE analysis