Hb_011930_150

Information

Type -
Description -
Location Contig11930: 113787-115703
Sequence    

Annotation

kegg
ID rcu:RCOM_0698980
description kinase, putative (EC:2.7.11.17)
nr
ID XP_012091971.1
description PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
swissprot
ID P0C5E2
description Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=2 SV=2
trembl
ID A0A067JET1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21719 PE=4 SV=1
Gene Ontology
ID GO:0004683
description probable serine threonine-protein kinase at1g18390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05719: 114196-115925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_150 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
2 Hb_029695_050 0.1086979551 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
3 Hb_001051_070 0.1113988184 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
4 Hb_135757_010 0.1121695939 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
5 Hb_009193_090 0.1179445133 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
6 Hb_000038_120 0.1186182229 - - PREDICTED: endoglucanase 9-like [Jatropha curcas]
7 Hb_000371_090 0.1223094219 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
8 Hb_001633_080 0.1244523315 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
9 Hb_010407_140 0.1293911418 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
10 Hb_002660_150 0.1318316488 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
11 Hb_011214_160 0.1318632804 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
12 Hb_001008_200 0.1323833395 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
13 Hb_003998_040 0.1333608192 - - organic anion transporter, putative [Ricinus communis]
14 Hb_000331_370 0.1351182576 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
15 Hb_000656_160 0.1353808548 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
16 Hb_000197_020 0.1357859606 - - PREDICTED: protein RER1A [Jatropha curcas]
17 Hb_030736_060 0.1362874973 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
18 Hb_000300_600 0.1366356194 - - tubulin alpha chain, putative [Ricinus communis]
19 Hb_000066_030 0.1367074899 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
20 Hb_004088_040 0.1368111034 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]

Gene co-expression network

sample Hb_011930_150 Hb_011930_150 Hb_029695_050 Hb_029695_050 Hb_011930_150--Hb_029695_050 Hb_001051_070 Hb_001051_070 Hb_011930_150--Hb_001051_070 Hb_135757_010 Hb_135757_010 Hb_011930_150--Hb_135757_010 Hb_009193_090 Hb_009193_090 Hb_011930_150--Hb_009193_090 Hb_000038_120 Hb_000038_120 Hb_011930_150--Hb_000038_120 Hb_000371_090 Hb_000371_090 Hb_011930_150--Hb_000371_090 Hb_000818_100 Hb_000818_100 Hb_029695_050--Hb_000818_100 Hb_029695_050--Hb_135757_010 Hb_030736_060 Hb_030736_060 Hb_029695_050--Hb_030736_060 Hb_029695_050--Hb_000371_090 Hb_007786_030 Hb_007786_030 Hb_029695_050--Hb_007786_030 Hb_000477_100 Hb_000477_100 Hb_001051_070--Hb_000477_100 Hb_007286_020 Hb_007286_020 Hb_001051_070--Hb_007286_020 Hb_000023_300 Hb_000023_300 Hb_001051_070--Hb_000023_300 Hb_011214_160 Hb_011214_160 Hb_001051_070--Hb_011214_160 Hb_003998_040 Hb_003998_040 Hb_001051_070--Hb_003998_040 Hb_000679_100 Hb_000679_100 Hb_001051_070--Hb_000679_100 Hb_135757_010--Hb_000679_100 Hb_135757_010--Hb_001051_070 Hb_001159_030 Hb_001159_030 Hb_135757_010--Hb_001159_030 Hb_135757_010--Hb_030736_060 Hb_007545_120 Hb_007545_120 Hb_009193_090--Hb_007545_120 Hb_001633_080 Hb_001633_080 Hb_009193_090--Hb_001633_080 Hb_002676_120 Hb_002676_120 Hb_009193_090--Hb_002676_120 Hb_002686_200 Hb_002686_200 Hb_009193_090--Hb_002686_200 Hb_159809_070 Hb_159809_070 Hb_009193_090--Hb_159809_070 Hb_006570_160 Hb_006570_160 Hb_009193_090--Hb_006570_160 Hb_012362_030 Hb_012362_030 Hb_000038_120--Hb_012362_030 Hb_004088_040 Hb_004088_040 Hb_000038_120--Hb_004088_040 Hb_135757_020 Hb_135757_020 Hb_000038_120--Hb_135757_020 Hb_001008_200 Hb_001008_200 Hb_000038_120--Hb_001008_200 Hb_000038_120--Hb_001051_070 Hb_000371_090--Hb_003998_040 Hb_000184_070 Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_000371_090--Hb_011214_160 Hb_000261_210 Hb_000261_210 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030 Hb_000066_030 Hb_000066_030 Hb_000371_090--Hb_000066_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8522 1.09898 3.46393 7.05945 1.58255 1.46744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75065 0.949318 2.39746 3.57093 1.17864

CAGE analysis