Hb_011930_160

Information

Type -
Description -
Location Contig11930: 116803-121561
Sequence    

Annotation

kegg
ID rcu:RCOM_0698990
description hypothetical protein
nr
ID XP_012091973.1
description PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
swissprot
ID Q5R3I4
description Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1
trembl
ID A0A067JP13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05720: 116816-121567 , PASA_asmbl_05721: 118316-119385 , PASA_asmbl_05722: 122508-123874
cDNA
(Sanger)
(ID:Location)		 018_P08.ab1: 116823-117074

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_160 0.0 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
2 Hb_003163_020 0.0425196076 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
3 Hb_001946_010 0.0479298347 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
4 Hb_004619_030 0.0586254958 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
5 Hb_003025_110 0.0600583493 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
6 Hb_000193_190 0.0602280983 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
7 Hb_103012_010 0.061675992 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
8 Hb_003813_130 0.0620670734 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
9 Hb_032202_200 0.0684381374 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000011_200 0.0687366269 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
11 Hb_003375_070 0.0689020301 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
12 Hb_000789_310 0.0689156465 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
13 Hb_000627_230 0.0708585384 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
14 Hb_000347_070 0.0710073088 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000523_050 0.0726346918 - - microsomal glutathione s-transferase, putative [Ricinus communis]
16 Hb_007576_110 0.0727249471 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
17 Hb_000617_180 0.0740507685 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
18 Hb_001141_020 0.0756367283 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
19 Hb_006827_020 0.0758066815 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000260_170 0.0768461549 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]

Gene co-expression network

sample Hb_011930_160 Hb_011930_160 Hb_003163_020 Hb_003163_020 Hb_011930_160--Hb_003163_020 Hb_001946_010 Hb_001946_010 Hb_011930_160--Hb_001946_010 Hb_004619_030 Hb_004619_030 Hb_011930_160--Hb_004619_030 Hb_003025_110 Hb_003025_110 Hb_011930_160--Hb_003025_110 Hb_000193_190 Hb_000193_190 Hb_011930_160--Hb_000193_190 Hb_103012_010 Hb_103012_010 Hb_011930_160--Hb_103012_010 Hb_003163_020--Hb_004619_030 Hb_000347_070 Hb_000347_070 Hb_003163_020--Hb_000347_070 Hb_000617_180 Hb_000617_180 Hb_003163_020--Hb_000617_180 Hb_000317_470 Hb_000317_470 Hb_003163_020--Hb_000317_470 Hb_000011_200 Hb_000011_200 Hb_003163_020--Hb_000011_200 Hb_001946_010--Hb_103012_010 Hb_000260_170 Hb_000260_170 Hb_001946_010--Hb_000260_170 Hb_001946_010--Hb_000193_190 Hb_001946_010--Hb_003025_110 Hb_000205_100 Hb_000205_100 Hb_001946_010--Hb_000205_100 Hb_004619_030--Hb_000347_070 Hb_004619_030--Hb_000011_200 Hb_004410_030 Hb_004410_030 Hb_004619_030--Hb_004410_030 Hb_004619_030--Hb_000617_180 Hb_003025_110--Hb_004410_030 Hb_003025_110--Hb_000011_200 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_003025_110--Hb_000617_180 Hb_000193_190--Hb_000205_100 Hb_000193_190--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000193_190--Hb_000225_040 Hb_007576_110 Hb_007576_110 Hb_000193_190--Hb_007576_110 Hb_103012_010--Hb_000260_170 Hb_000538_100 Hb_000538_100 Hb_103012_010--Hb_000538_100 Hb_007317_110 Hb_007317_110 Hb_103012_010--Hb_007317_110 Hb_002783_240 Hb_002783_240 Hb_103012_010--Hb_002783_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.7982 29.2462 34.2339 40.8402 62.8602 54.0746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.3412 31.2533 41.9449 49.7674 33.0044

CAGE analysis