Hb_011930_170

Information

Type -
Description -
Location Contig11930: 122465-123925
Sequence    

Annotation

kegg
ID rcu:RCOM_0699100
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002520166.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID Q9FUS8
description Glutathione S-transferase U17 OS=Arabidopsis thaliana GN=GSTU17 PE=2 SV=1
trembl
ID B9S2E7
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_0699100 PE=3 SV=1
Gene Ontology
ID GO:0004462
description glutathione s-transferase u17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05722: 122508-123874
cDNA
(Sanger)
(ID:Location)		 004_P03.ab1: 122644-123843

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_170 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_006152_040 0.1917076102 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]
3 Hb_001691_220 0.2206701498 - - PREDICTED: uncharacterized protein LOC105649537 [Jatropha curcas]
4 Hb_000958_040 0.2337267995 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
5 Hb_002701_160 0.2425250828 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
6 Hb_001579_290 0.2460304684 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
7 Hb_005357_180 0.2465229731 - - hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
8 Hb_010053_010 0.2543226705 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
9 Hb_002486_070 0.2555181164 transcription factor TF Family: LOB hypothetical protein POPTR_0008s07280g [Populus trichocarpa]
10 Hb_013726_010 0.2621160715 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001102_060 0.2688367138 - - PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
12 Hb_005332_010 0.2695776086 - - hypothetical protein EUGRSUZ_J02276 [Eucalyptus grandis]
13 Hb_000086_670 0.2698476719 - - PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
14 Hb_130498_010 0.272595129 - - Laccase 17 [Theobroma cacao]
15 Hb_001080_050 0.2734023328 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
16 Hb_027242_010 0.2734284298 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
17 Hb_002849_090 0.2735762075 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
18 Hb_021888_010 0.274608384 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
19 Hb_000161_230 0.2754138756 - - lactoylglutathione lyase, putative [Ricinus communis]
20 Hb_001414_020 0.2761051627 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011930_170 Hb_011930_170 Hb_006152_040 Hb_006152_040 Hb_011930_170--Hb_006152_040 Hb_001691_220 Hb_001691_220 Hb_011930_170--Hb_001691_220 Hb_000958_040 Hb_000958_040 Hb_011930_170--Hb_000958_040 Hb_002701_160 Hb_002701_160 Hb_011930_170--Hb_002701_160 Hb_001579_290 Hb_001579_290 Hb_011930_170--Hb_001579_290 Hb_005357_180 Hb_005357_180 Hb_011930_170--Hb_005357_180 Hb_000172_090 Hb_000172_090 Hb_006152_040--Hb_000172_090 Hb_006152_040--Hb_000958_040 Hb_000003_060 Hb_000003_060 Hb_006152_040--Hb_000003_060 Hb_093458_020 Hb_093458_020 Hb_006152_040--Hb_093458_020 Hb_000500_340 Hb_000500_340 Hb_006152_040--Hb_000500_340 Hb_027242_010 Hb_027242_010 Hb_001691_220--Hb_027242_010 Hb_001691_220--Hb_001579_290 Hb_002081_220 Hb_002081_220 Hb_001691_220--Hb_002081_220 Hb_000086_720 Hb_000086_720 Hb_001691_220--Hb_000086_720 Hb_187211_010 Hb_187211_010 Hb_001691_220--Hb_187211_010 Hb_001377_480 Hb_001377_480 Hb_001691_220--Hb_001377_480 Hb_000954_040 Hb_000954_040 Hb_000958_040--Hb_000954_040 Hb_007163_030 Hb_007163_030 Hb_000958_040--Hb_007163_030 Hb_011861_040 Hb_011861_040 Hb_000958_040--Hb_011861_040 Hb_001328_070 Hb_001328_070 Hb_000958_040--Hb_001328_070 Hb_001366_380 Hb_001366_380 Hb_000958_040--Hb_001366_380 Hb_077562_020 Hb_077562_020 Hb_000958_040--Hb_077562_020 Hb_003659_010 Hb_003659_010 Hb_002701_160--Hb_003659_010 Hb_005545_020 Hb_005545_020 Hb_002701_160--Hb_005545_020 Hb_130498_010 Hb_130498_010 Hb_002701_160--Hb_130498_010 Hb_001300_170 Hb_001300_170 Hb_002701_160--Hb_001300_170 Hb_013726_010 Hb_013726_010 Hb_002701_160--Hb_013726_010 Hb_003299_020 Hb_003299_020 Hb_002701_160--Hb_003299_020 Hb_001691_030 Hb_001691_030 Hb_001579_290--Hb_001691_030 Hb_002849_090 Hb_002849_090 Hb_001579_290--Hb_002849_090 Hb_002603_030 Hb_002603_030 Hb_001579_290--Hb_002603_030 Hb_000085_290 Hb_000085_290 Hb_001579_290--Hb_000085_290 Hb_001268_330 Hb_001268_330 Hb_001579_290--Hb_001268_330 Hb_024948_010 Hb_024948_010 Hb_005357_180--Hb_024948_010 Hb_000832_250 Hb_000832_250 Hb_005357_180--Hb_000832_250 Hb_138229_010 Hb_138229_010 Hb_005357_180--Hb_138229_010 Hb_001226_100 Hb_001226_100 Hb_005357_180--Hb_001226_100 Hb_006916_130 Hb_006916_130 Hb_005357_180--Hb_006916_130 Hb_164300_010 Hb_164300_010 Hb_005357_180--Hb_164300_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9968 0.901172 89.4935 45.9971 0.167331 0.455724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1974 5.85759 3.8763 99.6316 6.46628

CAGE analysis