Hb_011930_180

Information

Type -
Description -
Location Contig11930: 127033-128299
Sequence    

Annotation

kegg
ID rcu:RCOM_0699140
description hypothetical protein
nr
ID XP_002520169.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2F0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0699140 PE=4 SV=1
Gene Ontology
ID GO:0016301
description wall-associated receptor kinase-like 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05723: 127289-128273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000049_270 0.1497405178 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
3 Hb_006889_030 0.1606953888 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
4 Hb_011994_020 0.1626095599 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
5 Hb_006570_090 0.1674418693 - - tubulin beta chain, putative [Ricinus communis]
6 Hb_000692_100 0.1703751226 - - calcium-dependent protein kinase, putative [Ricinus communis]
7 Hb_000482_120 0.1745717054 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
8 Hb_000003_610 0.1748513097 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
9 Hb_000959_130 0.1762959185 - - organic anion transporter, putative [Ricinus communis]
10 Hb_000742_220 0.1807485326 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
11 Hb_000997_080 0.182414678 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
12 Hb_006088_020 0.1825401205 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_006788_110 0.183071714 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
14 Hb_000574_170 0.1832247993 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
15 Hb_006002_050 0.1834113747 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
16 Hb_002815_020 0.1841217082 transcription factor TF Family: G2-like Homeodomain-like superfamily protein isoform 2 [Theobroma cacao]
17 Hb_010337_040 0.1873091237 - - -
18 Hb_003125_210 0.187866491 - - Phospholipase C 4 precursor, putative [Ricinus communis]
19 Hb_000345_550 0.1881902317 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
20 Hb_000964_040 0.1892933291 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011930_180 Hb_011930_180 Hb_000049_270 Hb_000049_270 Hb_011930_180--Hb_000049_270 Hb_006889_030 Hb_006889_030 Hb_011930_180--Hb_006889_030 Hb_011994_020 Hb_011994_020 Hb_011930_180--Hb_011994_020 Hb_006570_090 Hb_006570_090 Hb_011930_180--Hb_006570_090 Hb_000692_100 Hb_000692_100 Hb_011930_180--Hb_000692_100 Hb_000482_120 Hb_000482_120 Hb_011930_180--Hb_000482_120 Hb_000049_270--Hb_006570_090 Hb_004007_070 Hb_004007_070 Hb_000049_270--Hb_004007_070 Hb_000023_110 Hb_000023_110 Hb_000049_270--Hb_000023_110 Hb_000098_170 Hb_000098_170 Hb_000049_270--Hb_000098_170 Hb_012807_150 Hb_012807_150 Hb_000049_270--Hb_012807_150 Hb_000049_270--Hb_006889_030 Hb_001119_070 Hb_001119_070 Hb_006889_030--Hb_001119_070 Hb_001459_090 Hb_001459_090 Hb_006889_030--Hb_001459_090 Hb_006889_030--Hb_000098_170 Hb_000236_180 Hb_000236_180 Hb_006889_030--Hb_000236_180 Hb_031284_030 Hb_031284_030 Hb_006889_030--Hb_031284_030 Hb_001894_020 Hb_001894_020 Hb_011994_020--Hb_001894_020 Hb_000903_040 Hb_000903_040 Hb_011994_020--Hb_000903_040 Hb_000964_040 Hb_000964_040 Hb_011994_020--Hb_000964_040 Hb_001754_130 Hb_001754_130 Hb_011994_020--Hb_001754_130 Hb_000309_060 Hb_000309_060 Hb_011994_020--Hb_000309_060 Hb_006570_090--Hb_012807_150 Hb_006570_090--Hb_004007_070 Hb_134014_010 Hb_134014_010 Hb_006570_090--Hb_134014_010 Hb_000603_020 Hb_000603_020 Hb_006570_090--Hb_000603_020 Hb_006570_090--Hb_000023_110 Hb_000692_100--Hb_000482_120 Hb_004223_240 Hb_004223_240 Hb_000692_100--Hb_004223_240 Hb_001054_040 Hb_001054_040 Hb_000692_100--Hb_001054_040 Hb_000617_330 Hb_000617_330 Hb_000692_100--Hb_000617_330 Hb_000692_100--Hb_006570_090 Hb_001318_100 Hb_001318_100 Hb_000692_100--Hb_001318_100 Hb_000453_020 Hb_000453_020 Hb_000482_120--Hb_000453_020 Hb_003029_120 Hb_003029_120 Hb_000482_120--Hb_003029_120 Hb_001855_020 Hb_001855_020 Hb_000482_120--Hb_001855_020 Hb_000574_170 Hb_000574_170 Hb_000482_120--Hb_000574_170 Hb_010337_040 Hb_010337_040 Hb_000482_120--Hb_010337_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125281 2.39776 8.26393 20.9636 2.35718 0.182568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.18266 1.97506 6.74502

CAGE analysis