Hb_011930_190

Information

Type -
Description -
Location Contig11930: 129791-135013
Sequence    

Annotation

kegg
ID rcu:RCOM_0699150
description transferase, transferring glycosyl groups, putative (EC:2.4.1.134)
nr
ID XP_012091981.1
description PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
swissprot
ID Q9LV16
description Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2
trembl
ID A0A067JP16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21725 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05724: 129282-132515 , PASA_asmbl_05725: 133246-133440 , PASA_asmbl_05726: 133556-134869 , PASA_asmbl_05727: 134950-135175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011930_190 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
2 Hb_031377_010 0.0591569576 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
3 Hb_002044_100 0.0600193512 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
4 Hb_000144_130 0.063237969 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000172_660 0.0656005587 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
6 Hb_003050_140 0.0708502511 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
7 Hb_000510_250 0.0749040945 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
8 Hb_007853_030 0.0768594318 - - structural molecule, putative [Ricinus communis]
9 Hb_001166_010 0.0771675547 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
10 Hb_005460_040 0.0771806527 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
11 Hb_007617_030 0.0803355102 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
12 Hb_001253_050 0.0848182335 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
13 Hb_002929_030 0.0851508396 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
14 Hb_007681_010 0.0852459716 - - hypothetical protein RCOM_2128750 [Ricinus communis]
15 Hb_032880_010 0.0866520718 - - PREDICTED: beta-glucosidase 24-like [Jatropha curcas]
16 Hb_000142_050 0.0875141393 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
17 Hb_001671_070 0.0890816196 - - kinase, putative [Ricinus communis]
18 Hb_001546_140 0.0901178749 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
19 Hb_001646_030 0.0901796298 - - PREDICTED: ribonuclease 3-like protein 3 [Jatropha curcas]
20 Hb_000130_340 0.091253157 - - -

Gene co-expression network

sample Hb_011930_190 Hb_011930_190 Hb_031377_010 Hb_031377_010 Hb_011930_190--Hb_031377_010 Hb_002044_100 Hb_002044_100 Hb_011930_190--Hb_002044_100 Hb_000144_130 Hb_000144_130 Hb_011930_190--Hb_000144_130 Hb_000172_660 Hb_000172_660 Hb_011930_190--Hb_000172_660 Hb_003050_140 Hb_003050_140 Hb_011930_190--Hb_003050_140 Hb_000510_250 Hb_000510_250 Hb_011930_190--Hb_000510_250 Hb_031377_010--Hb_000144_130 Hb_001671_070 Hb_001671_070 Hb_031377_010--Hb_001671_070 Hb_031377_010--Hb_000172_660 Hb_031377_010--Hb_002044_100 Hb_007617_030 Hb_007617_030 Hb_031377_010--Hb_007617_030 Hb_031377_010--Hb_000510_250 Hb_002044_100--Hb_000144_130 Hb_002044_100--Hb_000510_250 Hb_001166_010 Hb_001166_010 Hb_002044_100--Hb_001166_010 Hb_007681_010 Hb_007681_010 Hb_002044_100--Hb_007681_010 Hb_000144_130--Hb_000510_250 Hb_000144_130--Hb_001671_070 Hb_000144_130--Hb_001166_010 Hb_000130_340 Hb_000130_340 Hb_000144_130--Hb_000130_340 Hb_004627_050 Hb_004627_050 Hb_000172_660--Hb_004627_050 Hb_002245_050 Hb_002245_050 Hb_000172_660--Hb_002245_050 Hb_007853_030 Hb_007853_030 Hb_000172_660--Hb_007853_030 Hb_002929_030 Hb_002929_030 Hb_000172_660--Hb_002929_030 Hb_032880_010 Hb_032880_010 Hb_000172_660--Hb_032880_010 Hb_003050_140--Hb_031377_010 Hb_003050_140--Hb_000144_130 Hb_003050_140--Hb_002044_100 Hb_003050_140--Hb_000510_250 Hb_003050_140--Hb_001671_070 Hb_002259_120 Hb_002259_120 Hb_000510_250--Hb_002259_120 Hb_000510_250--Hb_001166_010 Hb_012675_040 Hb_012675_040 Hb_000510_250--Hb_012675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0713919 7.65635 2.22442 0.00983563 0.0188715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0446415 0.0351254 0 0.00698655 4.04686

CAGE analysis