Hb_011942_080

Information

Type -
Description -
Location Contig11942: 39747-47948
Sequence    

Annotation

kegg
ID fve:101293607
description putative DNA repair protein RAD23-1-like
nr
ID XP_012484759.1
description PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
swissprot
ID Q84L33
description Ubiquitin receptor RAD23b OS=Arabidopsis thaliana GN=RAD23B PE=1 SV=3
trembl
ID A0A0D2SUE1
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G091100 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin receptor rad23b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05745: 44566-44910 , PASA_asmbl_05746: 40356-40713 , PASA_asmbl_05747: 45373-45868 , PASA_asmbl_05748: 39742-47950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011942_080 0.0 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
2 Hb_031939_010 0.0508779481 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
3 Hb_003467_010 0.0632356789 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
4 Hb_007336_020 0.0637096354 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
5 Hb_000976_320 0.0669345002 - - UPF0061 protein azo1574 [Morus notabilis]
6 Hb_001357_380 0.0706709607 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_012799_110 0.0708138261 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
8 Hb_007643_050 0.0709140987 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_008253_010 0.0721299354 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
10 Hb_009265_080 0.0727103836 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
11 Hb_001486_340 0.0729568182 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
12 Hb_005245_130 0.0729668408 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
13 Hb_009222_010 0.0731266603 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_000322_100 0.0733457289 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
15 Hb_007632_110 0.0744233467 - - chromatin regulatory protein sir2, putative [Ricinus communis]
16 Hb_008803_090 0.0747581661 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
17 Hb_008695_120 0.0767687353 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
18 Hb_002475_160 0.0770696131 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
19 Hb_029920_050 0.0780893965 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
20 Hb_003849_060 0.0781574989 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_011942_080 Hb_011942_080 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_003467_010 Hb_003467_010 Hb_011942_080--Hb_003467_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_001357_380 Hb_001357_380 Hb_011942_080--Hb_001357_380 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_008887_050 Hb_008887_050 Hb_031939_010--Hb_008887_050 Hb_000290_020 Hb_000290_020 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_001014_010 Hb_001014_010 Hb_031939_010--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_031939_010--Hb_005245_130 Hb_004450_060 Hb_004450_060 Hb_003467_010--Hb_004450_060 Hb_000368_020 Hb_000368_020 Hb_003467_010--Hb_000368_020 Hb_003849_060 Hb_003849_060 Hb_003467_010--Hb_003849_060 Hb_007632_110 Hb_007632_110 Hb_003467_010--Hb_007632_110 Hb_000394_190 Hb_000394_190 Hb_003467_010--Hb_000394_190 Hb_007590_080 Hb_007590_080 Hb_007336_020--Hb_007590_080 Hb_002475_160 Hb_002475_160 Hb_007336_020--Hb_002475_160 Hb_000322_100 Hb_000322_100 Hb_007336_020--Hb_000322_100 Hb_001369_180 Hb_001369_180 Hb_007336_020--Hb_001369_180 Hb_008253_010 Hb_008253_010 Hb_007336_020--Hb_008253_010 Hb_106552_050 Hb_106552_050 Hb_000976_320--Hb_106552_050 Hb_008864_110 Hb_008864_110 Hb_000976_320--Hb_008864_110 Hb_000768_110 Hb_000768_110 Hb_000976_320--Hb_000768_110 Hb_000976_320--Hb_000322_100 Hb_001677_210 Hb_001677_210 Hb_000976_320--Hb_001677_210 Hb_000211_110 Hb_000211_110 Hb_001357_380--Hb_000211_110 Hb_000059_140 Hb_000059_140 Hb_001357_380--Hb_000059_140 Hb_000106_130 Hb_000106_130 Hb_001357_380--Hb_000106_130 Hb_001486_340 Hb_001486_340 Hb_001357_380--Hb_001486_340 Hb_001894_030 Hb_001894_030 Hb_001357_380--Hb_001894_030 Hb_012799_110--Hb_000394_190 Hb_012799_110--Hb_003849_060 Hb_011848_010 Hb_011848_010 Hb_012799_110--Hb_011848_010 Hb_033095_020 Hb_033095_020 Hb_012799_110--Hb_033095_020 Hb_012799_110--Hb_003467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.0627 34.2754 28.5376 20.5962 57.212 69.468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.7644 39.3194 24.2562 23.8747 14.1435

CAGE analysis