Hb_011953_020

Information

Type -
Description -
Location Contig11953: 23212-34357
Sequence    

Annotation

kegg
ID pop:POPTR_0003s14460g
description POPTRDRAFT_817435; ORMDL family protein
nr
ID XP_012086657.1
description PREDICTED: ORM1-like protein 1 [Jatropha curcas]
swissprot
ID Q921I0
description ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2 SV=1
trembl
ID A0A067JMQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20397 PE=4 SV=1
Gene Ontology
ID GO:0005789
description ormdl family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05885: 23281-34285 , PASA_asmbl_05886: 31150-31532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011953_020 0.0 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
2 Hb_002005_020 0.0738322595 - - conserved hypothetical protein [Ricinus communis]
3 Hb_093458_050 0.075198634 - - glutathione reductase [Hevea brasiliensis]
4 Hb_029866_020 0.0797849435 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
5 Hb_003551_050 0.0825656128 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
6 Hb_001519_050 0.0855993758 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
7 Hb_001519_030 0.0879286259 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
8 Hb_001360_050 0.09118205 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
9 Hb_000046_290 0.0912734933 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
10 Hb_000347_410 0.0924741171 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
11 Hb_012114_040 0.0942987064 - - DNA binding protein, putative [Ricinus communis]
12 Hb_000635_150 0.094330763 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
13 Hb_004724_340 0.094757754 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
14 Hb_000985_060 0.0978843683 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
15 Hb_032208_060 0.0991162615 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
16 Hb_001481_140 0.0994566866 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
17 Hb_004705_120 0.10010537 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000009_160 0.1002917031 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
19 Hb_001833_110 0.1010813395 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005883_100 0.1015781489 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_011953_020 Hb_011953_020 Hb_002005_020 Hb_002005_020 Hb_011953_020--Hb_002005_020 Hb_093458_050 Hb_093458_050 Hb_011953_020--Hb_093458_050 Hb_029866_020 Hb_029866_020 Hb_011953_020--Hb_029866_020 Hb_003551_050 Hb_003551_050 Hb_011953_020--Hb_003551_050 Hb_001519_050 Hb_001519_050 Hb_011953_020--Hb_001519_050 Hb_001519_030 Hb_001519_030 Hb_011953_020--Hb_001519_030 Hb_004218_110 Hb_004218_110 Hb_002005_020--Hb_004218_110 Hb_000023_090 Hb_000023_090 Hb_002005_020--Hb_000023_090 Hb_002759_060 Hb_002759_060 Hb_002005_020--Hb_002759_060 Hb_000567_120 Hb_000567_120 Hb_002005_020--Hb_000567_120 Hb_002005_020--Hb_001519_050 Hb_093458_050--Hb_003551_050 Hb_000922_390 Hb_000922_390 Hb_093458_050--Hb_000922_390 Hb_002600_040 Hb_002600_040 Hb_093458_050--Hb_002600_040 Hb_093458_050--Hb_001519_030 Hb_002239_060 Hb_002239_060 Hb_093458_050--Hb_002239_060 Hb_000347_410 Hb_000347_410 Hb_029866_020--Hb_000347_410 Hb_001396_100 Hb_001396_100 Hb_029866_020--Hb_001396_100 Hb_000240_090 Hb_000240_090 Hb_029866_020--Hb_000240_090 Hb_005731_170 Hb_005731_170 Hb_029866_020--Hb_005731_170 Hb_007943_090 Hb_007943_090 Hb_029866_020--Hb_007943_090 Hb_000976_360 Hb_000976_360 Hb_003551_050--Hb_000976_360 Hb_031862_110 Hb_031862_110 Hb_003551_050--Hb_031862_110 Hb_002603_160 Hb_002603_160 Hb_003551_050--Hb_002603_160 Hb_000753_130 Hb_000753_130 Hb_003551_050--Hb_000753_130 Hb_000635_150 Hb_000635_150 Hb_001519_050--Hb_000635_150 Hb_000373_130 Hb_000373_130 Hb_001519_050--Hb_000373_130 Hb_000125_190 Hb_000125_190 Hb_001519_050--Hb_000125_190 Hb_004705_120 Hb_004705_120 Hb_001519_050--Hb_004705_120 Hb_000005_080 Hb_000005_080 Hb_001519_050--Hb_000005_080 Hb_002061_040 Hb_002061_040 Hb_001519_050--Hb_002061_040 Hb_001481_140 Hb_001481_140 Hb_001519_030--Hb_001481_140 Hb_006569_100 Hb_006569_100 Hb_001519_030--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_001519_030--Hb_001005_080 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_000817_030 Hb_000817_030 Hb_001519_030--Hb_000817_030 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0509 7.84249 6.94627 16.508 15.0326 18.3367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.3431 36.9586 49.6813 21.8901 8.69355

CAGE analysis