Hb_011953_030

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig11953: 36252-38695
Sequence    

Annotation

kegg
ID pop:POPTR_0003s14450g
description POPTRDRAFT_1074213; hypothetical protein
nr
ID XP_002303678.1
description hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
swissprot
ID Q8LAP8
description Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2
trembl
ID B9GXU9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14450g PE=4 SV=1
Gene Ontology
ID GO:0003677
description f-box family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011953_030 0.0 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
2 Hb_002742_070 0.1322399977 - - PREDICTED: villin-4-like [Jatropha curcas]
3 Hb_000330_160 0.1379976345 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
4 Hb_000997_410 0.1530638742 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
5 Hb_001040_120 0.1541117028 - - allantoinase, putative [Ricinus communis]
6 Hb_002815_060 0.1587996551 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
7 Hb_003436_050 0.1651608202 - - arf gtpase-activating protein, putative [Ricinus communis]
8 Hb_002742_080 0.1685101988 - - unknown [Populus trichocarpa]
9 Hb_004374_080 0.1705838084 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
10 Hb_000100_130 0.1716387432 - - hypothetical protein VITISV_026702 [Vitis vinifera]
11 Hb_005144_030 0.1720415251 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
12 Hb_000062_060 0.174316276 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
13 Hb_001731_020 0.1751552428 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
14 Hb_003376_070 0.1759720858 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
15 Hb_031069_020 0.1772573386 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
16 Hb_036702_010 0.1800331951 - - phosphoprotein phosphatase, putative [Ricinus communis]
17 Hb_003157_030 0.1819598739 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
18 Hb_001196_060 0.1821629851 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
19 Hb_006501_020 0.1838231163 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
20 Hb_078477_050 0.1841690384 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011953_030 Hb_011953_030 Hb_002742_070 Hb_002742_070 Hb_011953_030--Hb_002742_070 Hb_000330_160 Hb_000330_160 Hb_011953_030--Hb_000330_160 Hb_000997_410 Hb_000997_410 Hb_011953_030--Hb_000997_410 Hb_001040_120 Hb_001040_120 Hb_011953_030--Hb_001040_120 Hb_002815_060 Hb_002815_060 Hb_011953_030--Hb_002815_060 Hb_003436_050 Hb_003436_050 Hb_011953_030--Hb_003436_050 Hb_002742_070--Hb_002815_060 Hb_178041_010 Hb_178041_010 Hb_002742_070--Hb_178041_010 Hb_003157_030 Hb_003157_030 Hb_002742_070--Hb_003157_030 Hb_010128_120 Hb_010128_120 Hb_002742_070--Hb_010128_120 Hb_002742_070--Hb_000330_160 Hb_005144_030 Hb_005144_030 Hb_000330_160--Hb_005144_030 Hb_003814_030 Hb_003814_030 Hb_000330_160--Hb_003814_030 Hb_001031_040 Hb_001031_040 Hb_000330_160--Hb_001031_040 Hb_000136_190 Hb_000136_190 Hb_000330_160--Hb_000136_190 Hb_001731_020 Hb_001731_020 Hb_000997_410--Hb_001731_020 Hb_114984_010 Hb_114984_010 Hb_000997_410--Hb_114984_010 Hb_006615_100 Hb_006615_100 Hb_000997_410--Hb_006615_100 Hb_000261_290 Hb_000261_290 Hb_000997_410--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_000997_410--Hb_006588_050 Hb_009620_030 Hb_009620_030 Hb_000997_410--Hb_009620_030 Hb_000029_320 Hb_000029_320 Hb_001040_120--Hb_000029_320 Hb_010180_040 Hb_010180_040 Hb_001040_120--Hb_010180_040 Hb_002070_070 Hb_002070_070 Hb_001040_120--Hb_002070_070 Hb_002159_040 Hb_002159_040 Hb_001040_120--Hb_002159_040 Hb_015763_030 Hb_015763_030 Hb_001040_120--Hb_015763_030 Hb_011497_010 Hb_011497_010 Hb_001040_120--Hb_011497_010 Hb_011206_010 Hb_011206_010 Hb_002815_060--Hb_011206_010 Hb_002815_060--Hb_001731_020 Hb_031069_020 Hb_031069_020 Hb_002815_060--Hb_031069_020 Hb_002903_080 Hb_002903_080 Hb_002815_060--Hb_002903_080 Hb_002815_060--Hb_001040_120 Hb_003436_050--Hb_000029_320 Hb_012404_070 Hb_012404_070 Hb_003436_050--Hb_012404_070 Hb_003029_130 Hb_003029_130 Hb_003436_050--Hb_003029_130 Hb_002249_120 Hb_002249_120 Hb_003436_050--Hb_002249_120 Hb_017895_020 Hb_017895_020 Hb_003436_050--Hb_017895_020 Hb_001473_090 Hb_001473_090 Hb_003436_050--Hb_001473_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.636 12.4619 3.20614 17.5831 16.0041 32.9699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32323 2.38147 2.02049 8.24724 7.49652

CAGE analysis