Hb_011985_020

Information

Type -
Description -
Location Contig11985: 10352-11875
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05660g
description POPTRDRAFT_203127; hypothetical protein
nr
ID XP_012090027.1
description PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
swissprot
ID Q9C8J6
description Phospholipase A1-Igamma3, chloroplastic OS=Arabidopsis thaliana GN=At1g51440 PE=1 SV=1
trembl
ID A0A067JRF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25940 PE=4 SV=1
Gene Ontology
ID GO:0008970
description phospholipase a1- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05952: 10901-11022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011985_020 0.0 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
2 Hb_004785_170 0.0935103184 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
3 Hb_000816_150 0.1049995606 - - oligopeptide transporter, putative [Ricinus communis]
4 Hb_008948_010 0.1100822211 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
5 Hb_017700_030 0.112866986 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
6 Hb_004450_090 0.1158707582 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
7 Hb_114733_010 0.116995499 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
8 Hb_000468_050 0.1189864369 - - -
9 Hb_001318_230 0.1251747288 - - Boron transporter, putative [Ricinus communis]
10 Hb_009225_070 0.1269545152 - - tonoplast intrinsic protein, putative [Ricinus communis]
11 Hb_004374_040 0.1278779431 - - PREDICTED: beta-carotene 3-hydroxylase, chloroplastic-like [Jatropha curcas]
12 Hb_003582_030 0.1288738351 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
13 Hb_000732_100 0.1303087423 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
14 Hb_011314_010 0.1305119873 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
15 Hb_000983_110 0.1349314168 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
16 Hb_000384_020 0.1360483926 - - sucrose phosphate syntase, putative [Ricinus communis]
17 Hb_029791_010 0.1364082729 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
18 Hb_080601_010 0.1368702147 - - metallothionein 3-like protein [Hevea brasiliensis]
19 Hb_000030_230 0.1402308833 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
20 Hb_000152_520 0.1417994249 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]

Gene co-expression network

sample Hb_011985_020 Hb_011985_020 Hb_004785_170 Hb_004785_170 Hb_011985_020--Hb_004785_170 Hb_000816_150 Hb_000816_150 Hb_011985_020--Hb_000816_150 Hb_008948_010 Hb_008948_010 Hb_011985_020--Hb_008948_010 Hb_017700_030 Hb_017700_030 Hb_011985_020--Hb_017700_030 Hb_004450_090 Hb_004450_090 Hb_011985_020--Hb_004450_090 Hb_114733_010 Hb_114733_010 Hb_011985_020--Hb_114733_010 Hb_004374_040 Hb_004374_040 Hb_004785_170--Hb_004374_040 Hb_004785_170--Hb_008948_010 Hb_000468_050 Hb_000468_050 Hb_004785_170--Hb_000468_050 Hb_011314_010 Hb_011314_010 Hb_004785_170--Hb_011314_010 Hb_001318_230 Hb_001318_230 Hb_004785_170--Hb_001318_230 Hb_000384_020 Hb_000384_020 Hb_000816_150--Hb_000384_020 Hb_000816_150--Hb_000468_050 Hb_000816_150--Hb_114733_010 Hb_000816_150--Hb_017700_030 Hb_009225_070 Hb_009225_070 Hb_000816_150--Hb_009225_070 Hb_000991_080 Hb_000991_080 Hb_000816_150--Hb_000991_080 Hb_005391_050 Hb_005391_050 Hb_008948_010--Hb_005391_050 Hb_002598_020 Hb_002598_020 Hb_008948_010--Hb_002598_020 Hb_008948_010--Hb_004450_090 Hb_008948_010--Hb_000816_150 Hb_002598_040 Hb_002598_040 Hb_017700_030--Hb_002598_040 Hb_017700_030--Hb_114733_010 Hb_000403_100 Hb_000403_100 Hb_017700_030--Hb_000403_100 Hb_017700_030--Hb_000384_020 Hb_003582_030 Hb_003582_030 Hb_017700_030--Hb_003582_030 Hb_000983_130 Hb_000983_130 Hb_004450_090--Hb_000983_130 Hb_002534_070 Hb_002534_070 Hb_004450_090--Hb_002534_070 Hb_061783_010 Hb_061783_010 Hb_004450_090--Hb_061783_010 Hb_004102_200 Hb_004102_200 Hb_004450_090--Hb_004102_200 Hb_029238_040 Hb_029238_040 Hb_004450_090--Hb_029238_040 Hb_000000_260 Hb_000000_260 Hb_004450_090--Hb_000000_260 Hb_114733_010--Hb_000384_020 Hb_173107_020 Hb_173107_020 Hb_114733_010--Hb_173107_020 Hb_114733_010--Hb_000991_080 Hb_000732_100 Hb_000732_100 Hb_114733_010--Hb_000732_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.41005 0.288167 3.15458 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0306642 0.0241245 0 0.19255 0.858552

CAGE analysis