Hb_011986_010

Information

Type -
Description -
Location Contig11986: 11100-13949
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011986_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_001114_040 0.1087071481 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
3 Hb_077935_010 0.2564100403 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_007054_050 0.2793540494 - - -
5 Hb_009150_030 0.284061015 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]
6 Hb_000122_210 0.2854224404 - - -
7 Hb_063405_020 0.2854780654 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
8 Hb_002450_170 0.2868726832 transcription factor TF Family: FAR1 Protein FAR1-RELATED SEQUENCE 5 [Glycine soja]
9 Hb_012572_020 0.2893934823 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_000640_030 0.3042730362 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_003349_100 0.3052774218 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000120_040 0.3058843481 - - -
13 Hb_001188_120 0.3062923057 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
14 Hb_012098_190 0.3132459436 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_016748_010 0.3174144402 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_005511_090 0.318586038 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
17 Hb_000283_080 0.3229361891 - - -
18 Hb_115376_010 0.3244124854 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
19 Hb_003835_100 0.3244167121 - - PREDICTED: putative U-box domain-containing protein 50 [Jatropha curcas]
20 Hb_002205_240 0.3259126875 - - hypothetical protein PRUPE_ppa005987mg [Prunus persica]

Gene co-expression network

sample Hb_011986_010 Hb_011986_010 Hb_001114_040 Hb_001114_040 Hb_011986_010--Hb_001114_040 Hb_077935_010 Hb_077935_010 Hb_011986_010--Hb_077935_010 Hb_007054_050 Hb_007054_050 Hb_011986_010--Hb_007054_050 Hb_009150_030 Hb_009150_030 Hb_011986_010--Hb_009150_030 Hb_000122_210 Hb_000122_210 Hb_011986_010--Hb_000122_210 Hb_063405_020 Hb_063405_020 Hb_011986_010--Hb_063405_020 Hb_001114_040--Hb_063405_020 Hb_001114_040--Hb_000122_210 Hb_001114_040--Hb_007054_050 Hb_001114_040--Hb_009150_030 Hb_002450_170 Hb_002450_170 Hb_001114_040--Hb_002450_170 Hb_003005_040 Hb_003005_040 Hb_077935_010--Hb_003005_040 Hb_000460_070 Hb_000460_070 Hb_077935_010--Hb_000460_070 Hb_077935_010--Hb_007054_050 Hb_001229_020 Hb_001229_020 Hb_077935_010--Hb_001229_020 Hb_008326_010 Hb_008326_010 Hb_077935_010--Hb_008326_010 Hb_007054_050--Hb_000460_070 Hb_002360_030 Hb_002360_030 Hb_007054_050--Hb_002360_030 Hb_008698_010 Hb_008698_010 Hb_007054_050--Hb_008698_010 Hb_000683_080 Hb_000683_080 Hb_007054_050--Hb_000683_080 Hb_007054_050--Hb_000122_210 Hb_004218_260 Hb_004218_260 Hb_007054_050--Hb_004218_260 Hb_003124_110 Hb_003124_110 Hb_009150_030--Hb_003124_110 Hb_000120_040 Hb_000120_040 Hb_009150_030--Hb_000120_040 Hb_001214_180 Hb_001214_180 Hb_009150_030--Hb_001214_180 Hb_007576_150 Hb_007576_150 Hb_009150_030--Hb_007576_150 Hb_002290_030 Hb_002290_030 Hb_009150_030--Hb_002290_030 Hb_000318_130 Hb_000318_130 Hb_009150_030--Hb_000318_130 Hb_000283_080 Hb_000283_080 Hb_000122_210--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000122_210--Hb_007747_210 Hb_000122_210--Hb_000120_040 Hb_006420_050 Hb_006420_050 Hb_000122_210--Hb_006420_050 Hb_042202_030 Hb_042202_030 Hb_000122_210--Hb_042202_030 Hb_002338_050 Hb_002338_050 Hb_000122_210--Hb_002338_050 Hb_063405_020--Hb_002360_030 Hb_011310_080 Hb_011310_080 Hb_063405_020--Hb_011310_080 Hb_002188_140 Hb_002188_140 Hb_063405_020--Hb_002188_140 Hb_000001_130 Hb_000001_130 Hb_063405_020--Hb_000001_130 Hb_063405_020--Hb_007054_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0459019 0.00603039 0 0.037172 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0175389 0.0276024 0.0526278 0.0438418 0.117362

CAGE analysis