Hb_011987_010

Information

Type -
Description -
Location Contig11987: 16192-27151
Sequence    

Annotation

kegg
ID mdm:103445517
description uncharacterized LOC103445517
nr
ID XP_012073065.1
description PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID Q8H6Q8
description CTV.20 OS=Poncirus trifoliata GN=CTV.20 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105634770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011987_010 0.0 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
2 Hb_106274_010 0.0658299848 - - hypothetical protein VITISV_008825 [Vitis vinifera]
3 Hb_001231_020 0.0759993142 - - -
4 Hb_005551_030 0.077827626 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
5 Hb_005666_030 0.0815539297 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
6 Hb_004968_090 0.0876790772 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
7 Hb_015824_020 0.1006736801 - - -
8 Hb_023386_030 0.1013544983 - - -
9 Hb_019135_010 0.1038756837 - - -
10 Hb_007632_140 0.1082549441 - - -
11 Hb_001691_130 0.1139664361 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
12 Hb_011716_120 0.1217228041 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
13 Hb_000362_100 0.1339639864 - - -
14 Hb_002630_030 0.138614043 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
15 Hb_000367_150 0.1412606041 - - -
16 Hb_005021_040 0.1463055138 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
17 Hb_001699_020 0.1524226166 - - hypothetical protein L484_026849 [Morus notabilis]
18 Hb_011931_090 0.1569676213 - - -
19 Hb_000476_030 0.1573634362 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
20 Hb_000497_310 0.1575457384 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011987_010 Hb_011987_010 Hb_106274_010 Hb_106274_010 Hb_011987_010--Hb_106274_010 Hb_001231_020 Hb_001231_020 Hb_011987_010--Hb_001231_020 Hb_005551_030 Hb_005551_030 Hb_011987_010--Hb_005551_030 Hb_005666_030 Hb_005666_030 Hb_011987_010--Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_011987_010--Hb_004968_090 Hb_015824_020 Hb_015824_020 Hb_011987_010--Hb_015824_020 Hb_106274_010--Hb_001231_020 Hb_106274_010--Hb_005551_030 Hb_106274_010--Hb_005666_030 Hb_106274_010--Hb_004968_090 Hb_001691_130 Hb_001691_130 Hb_106274_010--Hb_001691_130 Hb_001231_020--Hb_005551_030 Hb_001231_020--Hb_005666_030 Hb_001231_020--Hb_004968_090 Hb_001231_020--Hb_001691_130 Hb_002630_030 Hb_002630_030 Hb_001231_020--Hb_002630_030 Hb_005551_030--Hb_005666_030 Hb_005551_030--Hb_004968_090 Hb_005551_030--Hb_001691_130 Hb_005551_030--Hb_002630_030 Hb_005666_030--Hb_004968_090 Hb_005666_030--Hb_001691_130 Hb_005666_030--Hb_002630_030 Hb_004968_090--Hb_001691_130 Hb_004968_090--Hb_002630_030 Hb_023386_030 Hb_023386_030 Hb_015824_020--Hb_023386_030 Hb_000497_310 Hb_000497_310 Hb_015824_020--Hb_000497_310 Hb_015824_020--Hb_005666_030 Hb_015824_020--Hb_004968_090 Hb_002041_010 Hb_002041_010 Hb_015824_020--Hb_002041_010 Hb_015824_020--Hb_005551_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00288805 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00551391 0.0299261

CAGE analysis