Hb_012018_010

Information

Type -
Description -
Location Contig12018: 796-5602
Sequence    

Annotation

kegg
ID pop:POPTR_0275s002101
description hypothetical protein
nr
ID EYU39369.1
description hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID A0A022RHA1
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0024251mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012018_010 0.0 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
2 Hb_010080_020 0.0948729379 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
3 Hb_001921_010 0.1514220681 - - ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_001608_030 0.1653534056 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
5 Hb_006414_020 0.1698226478 transcription factor TF Family: MYB -
6 Hb_136660_010 0.171102032 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000107_440 0.1722907277 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
8 Hb_073119_010 0.1730614006 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
9 Hb_002272_140 0.1734639537 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
10 Hb_004466_070 0.1745550613 - - hypothetical protein RCOM_1447500 [Ricinus communis]
11 Hb_000003_420 0.1786529484 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_002609_150 0.1792863941 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
13 Hb_033642_070 0.1804345534 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
14 Hb_000103_400 0.1806669844 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
15 Hb_001377_500 0.1806785359 - - DOF AFFECTING GERMINATION 2 family protein [Populus trichocarpa]
16 Hb_008948_080 0.1815958458 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
17 Hb_004230_060 0.1824136396 - - PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
18 Hb_000803_060 0.1825744151 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
19 Hb_000395_030 0.1832307788 - - oligopeptide transporter, putative [Ricinus communis]
20 Hb_138628_010 0.1844358192 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_012018_010 Hb_012018_010 Hb_010080_020 Hb_010080_020 Hb_012018_010--Hb_010080_020 Hb_001921_010 Hb_001921_010 Hb_012018_010--Hb_001921_010 Hb_001608_030 Hb_001608_030 Hb_012018_010--Hb_001608_030 Hb_006414_020 Hb_006414_020 Hb_012018_010--Hb_006414_020 Hb_136660_010 Hb_136660_010 Hb_012018_010--Hb_136660_010 Hb_000107_440 Hb_000107_440 Hb_012018_010--Hb_000107_440 Hb_010080_020--Hb_001921_010 Hb_073119_010 Hb_073119_010 Hb_010080_020--Hb_073119_010 Hb_010080_020--Hb_001608_030 Hb_012702_010 Hb_012702_010 Hb_010080_020--Hb_012702_010 Hb_021596_070 Hb_021596_070 Hb_010080_020--Hb_021596_070 Hb_002475_130 Hb_002475_130 Hb_001921_010--Hb_002475_130 Hb_002218_070 Hb_002218_070 Hb_001921_010--Hb_002218_070 Hb_008175_030 Hb_008175_030 Hb_001921_010--Hb_008175_030 Hb_000819_010 Hb_000819_010 Hb_001921_010--Hb_000819_010 Hb_000333_120 Hb_000333_120 Hb_001921_010--Hb_000333_120 Hb_007137_030 Hb_007137_030 Hb_001608_030--Hb_007137_030 Hb_093177_010 Hb_093177_010 Hb_001608_030--Hb_093177_010 Hb_158696_010 Hb_158696_010 Hb_001608_030--Hb_158696_010 Hb_000007_160 Hb_000007_160 Hb_001608_030--Hb_000007_160 Hb_000984_100 Hb_000984_100 Hb_001608_030--Hb_000984_100 Hb_000803_060 Hb_000803_060 Hb_006414_020--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_006414_020--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_006414_020--Hb_012787_040 Hb_011360_090 Hb_011360_090 Hb_006414_020--Hb_011360_090 Hb_000103_400 Hb_000103_400 Hb_006414_020--Hb_000103_400 Hb_001258_150 Hb_001258_150 Hb_006414_020--Hb_001258_150 Hb_147873_010 Hb_147873_010 Hb_136660_010--Hb_147873_010 Hb_060909_010 Hb_060909_010 Hb_136660_010--Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_136660_010--Hb_001408_150 Hb_126103_010 Hb_126103_010 Hb_136660_010--Hb_126103_010 Hb_136660_010--Hb_001921_010 Hb_000038_040 Hb_000038_040 Hb_000107_440--Hb_000038_040 Hb_000107_440--Hb_000803_060 Hb_006846_020 Hb_006846_020 Hb_000107_440--Hb_006846_020 Hb_011716_050 Hb_011716_050 Hb_000107_440--Hb_011716_050 Hb_002477_120 Hb_002477_120 Hb_000107_440--Hb_002477_120 Hb_007007_080 Hb_007007_080 Hb_000107_440--Hb_007007_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.99944 55.0884 10.1988 5.9964 2.62355 1.71167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.27495 0.360438 2.40053 15.8568 4.07803

CAGE analysis