Hb_012019_010

Information

Type -
Description -
Location Contig12019: 8142-11969
Sequence    

Annotation

kegg
ID rcu:RCOM_0646580
description Protein AFR, putative
nr
ID XP_012092208.1
description PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
swissprot
ID Q9M1W7
description F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2
trembl
ID A0A067JC94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21903 PE=4 SV=1
Gene Ontology
ID GO:0003676
description f-box kelch-repeat protein skip30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06255: 8479-12767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012019_010 0.0 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
2 Hb_002046_180 0.0432785775 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
3 Hb_005463_100 0.0563035513 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
4 Hb_005779_060 0.0630278897 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
5 Hb_000876_070 0.0654946392 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
6 Hb_002110_150 0.0668414608 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
7 Hb_000614_160 0.0679474779 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
8 Hb_005846_040 0.0688323818 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
9 Hb_000062_220 0.0688575316 - - BnaC02g35870D [Brassica napus]
10 Hb_000703_350 0.0689170667 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
11 Hb_008725_260 0.0694225899 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
12 Hb_001245_100 0.0697525433 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
13 Hb_005725_250 0.0699264531 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
14 Hb_000866_220 0.0701333714 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
15 Hb_001766_060 0.0716748556 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002739_100 0.0720814673 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
17 Hb_075449_010 0.0724501288 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
18 Hb_000676_180 0.0741797923 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
19 Hb_000331_550 0.0750023173 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
20 Hb_000684_470 0.0755274987 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]

Gene co-expression network

sample Hb_012019_010 Hb_012019_010 Hb_002046_180 Hb_002046_180 Hb_012019_010--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_012019_010--Hb_005463_100 Hb_005779_060 Hb_005779_060 Hb_012019_010--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_012019_010--Hb_000876_070 Hb_002110_150 Hb_002110_150 Hb_012019_010--Hb_002110_150 Hb_000614_160 Hb_000614_160 Hb_012019_010--Hb_000614_160 Hb_002046_180--Hb_002110_150 Hb_002046_180--Hb_005779_060 Hb_002046_180--Hb_000876_070 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_002046_180--Hb_005463_100 Hb_005463_100--Hb_002110_150 Hb_000684_470 Hb_000684_470 Hb_005463_100--Hb_000684_470 Hb_000003_250 Hb_000003_250 Hb_005463_100--Hb_000003_250 Hb_009767_110 Hb_009767_110 Hb_005463_100--Hb_009767_110 Hb_005779_060--Hb_000876_070 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_002739_100 Hb_002739_100 Hb_005779_060--Hb_002739_100 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_005779_060--Hb_002110_150 Hb_000876_070--Hb_002739_100 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_002110_150--Hb_008725_260 Hb_002110_150--Hb_000016_250 Hb_002110_150--Hb_009767_110 Hb_007389_010 Hb_007389_010 Hb_000614_160--Hb_007389_010 Hb_000260_030 Hb_000260_030 Hb_000614_160--Hb_000260_030 Hb_005496_140 Hb_005496_140 Hb_000614_160--Hb_005496_140 Hb_000614_220 Hb_000614_220 Hb_000614_160--Hb_000614_220 Hb_000614_160--Hb_002046_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3559 13.1444 8.71677 12.0983 11.6518 10.4751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0304 22.4688 19.5119 9.33194 11.545

CAGE analysis