Hb_012019_030

Information

Type -
Description -
Location Contig12019: 20819-22041
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23360g
description POPTRDRAFT_864160; hypothetical protein
nr
ID XP_002306782.2
description hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H8A8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23360g PE=4 SV=2
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein at2g13820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012019_030 0.0 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
2 Hb_004195_040 0.0192879634 - - salicylic acid methyl transferase [Capsicum annuum]
3 Hb_001141_170 0.0572723162 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
4 Hb_004185_040 0.0608171558 - - polygalacturonase, putative [Ricinus communis]
5 Hb_001114_300 0.0623238292 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
6 Hb_006478_190 0.0701144995 - - lipid binding protein, putative [Ricinus communis]
7 Hb_005731_080 0.0753951456 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_000905_140 0.080189881 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
9 Hb_000813_120 0.0807909057 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
10 Hb_001080_310 0.0815012743 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
11 Hb_000859_040 0.0815734236 - - Early nodulin 16 precursor, putative [Ricinus communis]
12 Hb_139460_010 0.0819247486 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
13 Hb_000329_410 0.0832046034 - - Beta-expansin 3 precursor, putative [Ricinus communis]
14 Hb_000160_230 0.0850476171 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
15 Hb_002311_050 0.0855252477 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
16 Hb_002743_030 0.0873054964 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
17 Hb_007810_140 0.087841803 - - Ankyrin repeat-containing protein [Medicago truncatula]
18 Hb_003074_070 0.0880590993 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_011824_010 0.0897805308 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
20 Hb_122574_020 0.0909506505 - - hypothetical protein JCGZ_24076 [Jatropha curcas]

Gene co-expression network

sample Hb_012019_030 Hb_012019_030 Hb_004195_040 Hb_004195_040 Hb_012019_030--Hb_004195_040 Hb_001141_170 Hb_001141_170 Hb_012019_030--Hb_001141_170 Hb_004185_040 Hb_004185_040 Hb_012019_030--Hb_004185_040 Hb_001114_300 Hb_001114_300 Hb_012019_030--Hb_001114_300 Hb_006478_190 Hb_006478_190 Hb_012019_030--Hb_006478_190 Hb_005731_080 Hb_005731_080 Hb_012019_030--Hb_005731_080 Hb_004195_040--Hb_004185_040 Hb_004195_040--Hb_001141_170 Hb_139460_010 Hb_139460_010 Hb_004195_040--Hb_139460_010 Hb_000813_120 Hb_000813_120 Hb_004195_040--Hb_000813_120 Hb_004195_040--Hb_005731_080 Hb_001141_170--Hb_001114_300 Hb_010712_020 Hb_010712_020 Hb_001141_170--Hb_010712_020 Hb_000859_040 Hb_000859_040 Hb_001141_170--Hb_000859_040 Hb_011824_010 Hb_011824_010 Hb_001141_170--Hb_011824_010 Hb_001173_050 Hb_001173_050 Hb_004185_040--Hb_001173_050 Hb_011856_010 Hb_011856_010 Hb_004185_040--Hb_011856_010 Hb_004185_040--Hb_139460_010 Hb_004185_040--Hb_000813_120 Hb_000905_140 Hb_000905_140 Hb_001114_300--Hb_000905_140 Hb_000329_410 Hb_000329_410 Hb_001114_300--Hb_000329_410 Hb_001114_300--Hb_000859_040 Hb_169426_010 Hb_169426_010 Hb_001114_300--Hb_169426_010 Hb_005780_010 Hb_005780_010 Hb_001114_300--Hb_005780_010 Hb_031862_240 Hb_031862_240 Hb_006478_190--Hb_031862_240 Hb_006478_190--Hb_000329_410 Hb_021931_030 Hb_021931_030 Hb_006478_190--Hb_021931_030 Hb_161981_020 Hb_161981_020 Hb_006478_190--Hb_161981_020 Hb_110822_020 Hb_110822_020 Hb_006478_190--Hb_110822_020 Hb_002081_250 Hb_002081_250 Hb_006478_190--Hb_002081_250 Hb_005993_070 Hb_005993_070 Hb_005731_080--Hb_005993_070 Hb_002743_030 Hb_002743_030 Hb_005731_080--Hb_002743_030 Hb_005731_080--Hb_006478_190 Hb_000365_300 Hb_000365_300 Hb_005731_080--Hb_000365_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.16409 0.0646622 0.16856 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.56339 0

CAGE analysis