Hb_012022_030

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig12022: 52004-55369
Sequence    

Annotation

kegg
ID rcu:RCOM_0643160
description phd/F-box containing protein, putative
nr
ID XP_002528085.1
description phd/F-box containing protein, putative [Ricinus communis]
swissprot
ID Q9FFF5
description PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1
trembl
ID B9SQ16
description Phd/F-box containing protein, putative OS=Ricinus communis GN=RCOM_0643160 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein alfin-like 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06260: 52047-55218 , PASA_asmbl_06261: 52054-55182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_030 0.0 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
2 Hb_039946_020 0.0591650074 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002137_020 0.0690113051 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_004223_280 0.0700544283 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
5 Hb_000613_140 0.0736486792 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
6 Hb_000877_060 0.0769071497 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
7 Hb_000571_120 0.0795978924 - - importin beta-1, putative [Ricinus communis]
8 Hb_000445_420 0.0825550884 - - protein transporter, putative [Ricinus communis]
9 Hb_001604_010 0.0833152162 - - 14-3-3 protein, putative [Ricinus communis]
10 Hb_000720_120 0.0844757545 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
11 Hb_001477_130 0.0846711626 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
12 Hb_003615_010 0.0847751617 - - 60S ribosomal protein L8, putative [Ricinus communis]
13 Hb_002685_170 0.0855185674 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
14 Hb_005539_030 0.0857442703 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
15 Hb_002900_190 0.0871232646 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
16 Hb_004223_090 0.0871544087 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
17 Hb_000638_080 0.0881923394 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
18 Hb_002026_180 0.0891028027 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
19 Hb_004491_010 0.0892570515 - - 60S ribosomal protein L51, putative [Ricinus communis]
20 Hb_007441_120 0.0893060539 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012022_030 Hb_012022_030 Hb_039946_020 Hb_039946_020 Hb_012022_030--Hb_039946_020 Hb_002137_020 Hb_002137_020 Hb_012022_030--Hb_002137_020 Hb_004223_280 Hb_004223_280 Hb_012022_030--Hb_004223_280 Hb_000613_140 Hb_000613_140 Hb_012022_030--Hb_000613_140 Hb_000877_060 Hb_000877_060 Hb_012022_030--Hb_000877_060 Hb_000571_120 Hb_000571_120 Hb_012022_030--Hb_000571_120 Hb_000629_010 Hb_000629_010 Hb_039946_020--Hb_000629_010 Hb_004223_090 Hb_004223_090 Hb_039946_020--Hb_004223_090 Hb_000062_240 Hb_000062_240 Hb_039946_020--Hb_000062_240 Hb_003615_010 Hb_003615_010 Hb_039946_020--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_039946_020--Hb_002026_180 Hb_002137_020--Hb_004223_280 Hb_007441_230 Hb_007441_230 Hb_002137_020--Hb_007441_230 Hb_002137_020--Hb_000571_120 Hb_003464_060 Hb_003464_060 Hb_002137_020--Hb_003464_060 Hb_002016_110 Hb_002016_110 Hb_002137_020--Hb_002016_110 Hb_005357_030 Hb_005357_030 Hb_004223_280--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_004223_280--Hb_002685_170 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130 Hb_000720_120 Hb_000720_120 Hb_000613_140--Hb_000720_120 Hb_003020_230 Hb_003020_230 Hb_000613_140--Hb_003020_230 Hb_000926_250 Hb_000926_250 Hb_000613_140--Hb_000926_250 Hb_000613_140--Hb_003615_010 Hb_000613_140--Hb_000510_130 Hb_004221_010 Hb_004221_010 Hb_000877_060--Hb_004221_010 Hb_001248_050 Hb_001248_050 Hb_000877_060--Hb_001248_050 Hb_011828_020 Hb_011828_020 Hb_000877_060--Hb_011828_020 Hb_000877_060--Hb_000720_120 Hb_002762_060 Hb_002762_060 Hb_000877_060--Hb_002762_060 Hb_000571_120--Hb_002026_180 Hb_007441_200 Hb_007441_200 Hb_000571_120--Hb_007441_200 Hb_000953_020 Hb_000953_020 Hb_000571_120--Hb_000953_020 Hb_000768_040 Hb_000768_040 Hb_000571_120--Hb_000768_040 Hb_000805_020 Hb_000805_020 Hb_000571_120--Hb_000805_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.6256 49.7899 29.8437 29.9752 58.5152 91.5872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.822 83.8526 83.1293 75.3909 18.3587

CAGE analysis