Hb_012022_040

Information

Type -
Description -
Location Contig12022: 60086-64827
Sequence    

Annotation

kegg
ID rcu:RCOM_0643270
description Protein SIS1, putative
nr
ID XP_002528086.1
description Protein SIS1, putative [Ricinus communis]
swissprot
ID Q3MI00
description DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3
trembl
ID B9SQ17
description Protein SIS1, putative OS=Ricinus communis GN=RCOM_0643270 PE=4 SV=1
Gene Ontology
ID GO:0051082
description dnaj homolog subfamily b member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06262: 60058-64753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_040 0.0 - - Protein SIS1, putative [Ricinus communis]
2 Hb_000856_010 0.0437258192 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
3 Hb_001278_100 0.0523573805 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
4 Hb_004109_220 0.0561020509 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
5 Hb_149985_010 0.0578611331 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
6 Hb_000221_190 0.0598057513 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
7 Hb_000928_070 0.0600723397 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
8 Hb_003582_060 0.0655386766 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
9 Hb_000359_060 0.0672110003 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
10 Hb_004108_220 0.0694298373 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
11 Hb_005054_110 0.0695087967 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
12 Hb_005162_090 0.0696719405 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
13 Hb_000288_030 0.0700968095 - - PREDICTED: syntaxin-32 [Jatropha curcas]
14 Hb_168978_010 0.0704247759 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
15 Hb_010423_030 0.0715115467 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
16 Hb_000260_350 0.0716236068 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003878_090 0.0727255698 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
18 Hb_062226_130 0.0733135968 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
19 Hb_000347_250 0.0736265882 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
20 Hb_001511_060 0.0749810342 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_012022_040 Hb_012022_040 Hb_000856_010 Hb_000856_010 Hb_012022_040--Hb_000856_010 Hb_001278_100 Hb_001278_100 Hb_012022_040--Hb_001278_100 Hb_004109_220 Hb_004109_220 Hb_012022_040--Hb_004109_220 Hb_149985_010 Hb_149985_010 Hb_012022_040--Hb_149985_010 Hb_000221_190 Hb_000221_190 Hb_012022_040--Hb_000221_190 Hb_000928_070 Hb_000928_070 Hb_012022_040--Hb_000928_070 Hb_000856_010--Hb_000928_070 Hb_005054_110 Hb_005054_110 Hb_000856_010--Hb_005054_110 Hb_004078_040 Hb_004078_040 Hb_000856_010--Hb_004078_040 Hb_000856_010--Hb_000221_190 Hb_000359_060 Hb_000359_060 Hb_000856_010--Hb_000359_060 Hb_000032_380 Hb_000032_380 Hb_001278_100--Hb_000032_380 Hb_000270_310 Hb_000270_310 Hb_001278_100--Hb_000270_310 Hb_003582_060 Hb_003582_060 Hb_001278_100--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_001278_100--Hb_000390_300 Hb_164010_040 Hb_164010_040 Hb_001278_100--Hb_164010_040 Hb_004109_220--Hb_149985_010 Hb_000288_030 Hb_000288_030 Hb_004109_220--Hb_000288_030 Hb_004109_220--Hb_000359_060 Hb_004109_220--Hb_000928_070 Hb_001511_060 Hb_001511_060 Hb_004109_220--Hb_001511_060 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_149985_010--Hb_000359_060 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210 Hb_000221_190--Hb_003582_060 Hb_000310_020 Hb_000310_020 Hb_000221_190--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000221_190--Hb_000505_130 Hb_006615_240 Hb_006615_240 Hb_000221_190--Hb_006615_240 Hb_000221_190--Hb_001278_100 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000928_070--Hb_000288_030 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7005 19.3386 17.6918 28.0615 13.3814 14.9854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4159 32.3353 22.2159 17.7589 21.4178

CAGE analysis