Hb_012022_070

Information

Type -
Description -
Location Contig12022: 102101-103030
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12370g
description POPTRDRAFT_576973; hypothetical protein
nr
ID Q39963.1
description RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
swissprot
ID Q39963
description Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1
trembl
ID A0A067JNQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25012 PE=3 SV=1
Gene Ontology
ID GO:0003824
description pyridoxal biosynthesis protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_070 0.0 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
2 Hb_002154_100 0.089084044 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
3 Hb_008785_040 0.095734028 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
4 Hb_006502_090 0.0991701277 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
5 Hb_002681_070 0.1031372617 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
6 Hb_004097_050 0.103882772 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
7 Hb_006913_030 0.1053980706 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
8 Hb_005181_110 0.1063401437 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
9 Hb_035755_010 0.1070295352 - - unknown [Populus trichocarpa]
10 Hb_002890_020 0.1097748898 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
11 Hb_004100_080 0.1107060182 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001860_050 0.112811882 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
13 Hb_000977_210 0.1144187079 - - chromatin assembly factor 1, subunit A, putative [Ricinus communis]
14 Hb_005271_190 0.1150842765 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_000819_080 0.115311454 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_001014_160 0.1157068111 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
17 Hb_000373_280 0.1161950199 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
18 Hb_005496_130 0.1163933495 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
19 Hb_000538_160 0.1164493667 - - PREDICTED: RNA-binding protein 5 isoform X3 [Jatropha curcas]
20 Hb_003847_130 0.1178245404 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]

Gene co-expression network

sample Hb_012022_070 Hb_012022_070 Hb_002154_100 Hb_002154_100 Hb_012022_070--Hb_002154_100 Hb_008785_040 Hb_008785_040 Hb_012022_070--Hb_008785_040 Hb_006502_090 Hb_006502_090 Hb_012022_070--Hb_006502_090 Hb_002681_070 Hb_002681_070 Hb_012022_070--Hb_002681_070 Hb_004097_050 Hb_004097_050 Hb_012022_070--Hb_004097_050 Hb_006913_030 Hb_006913_030 Hb_012022_070--Hb_006913_030 Hb_001014_160 Hb_001014_160 Hb_002154_100--Hb_001014_160 Hb_000331_260 Hb_000331_260 Hb_002154_100--Hb_000331_260 Hb_007390_010 Hb_007390_010 Hb_002154_100--Hb_007390_010 Hb_156279_020 Hb_156279_020 Hb_002154_100--Hb_156279_020 Hb_044728_010 Hb_044728_010 Hb_002154_100--Hb_044728_010 Hb_110291_010 Hb_110291_010 Hb_002154_100--Hb_110291_010 Hb_008785_040--Hb_002681_070 Hb_005496_130 Hb_005496_130 Hb_008785_040--Hb_005496_130 Hb_006915_070 Hb_006915_070 Hb_008785_040--Hb_006915_070 Hb_008785_040--Hb_002154_100 Hb_004100_080 Hb_004100_080 Hb_008785_040--Hb_004100_080 Hb_000856_110 Hb_000856_110 Hb_008785_040--Hb_000856_110 Hb_002044_080 Hb_002044_080 Hb_006502_090--Hb_002044_080 Hb_001545_120 Hb_001545_120 Hb_006502_090--Hb_001545_120 Hb_013607_030 Hb_013607_030 Hb_006502_090--Hb_013607_030 Hb_007632_030 Hb_007632_030 Hb_006502_090--Hb_007632_030 Hb_017904_010 Hb_017904_010 Hb_006502_090--Hb_017904_010 Hb_000120_790 Hb_000120_790 Hb_006502_090--Hb_000120_790 Hb_002681_070--Hb_006915_070 Hb_001019_190 Hb_001019_190 Hb_002681_070--Hb_001019_190 Hb_000034_040 Hb_000034_040 Hb_002681_070--Hb_000034_040 Hb_000819_080 Hb_000819_080 Hb_002681_070--Hb_000819_080 Hb_002681_070--Hb_005496_130 Hb_032258_030 Hb_032258_030 Hb_004097_050--Hb_032258_030 Hb_000329_140 Hb_000329_140 Hb_004097_050--Hb_000329_140 Hb_004097_050--Hb_008785_040 Hb_035755_010 Hb_035755_010 Hb_004097_050--Hb_035755_010 Hb_000373_280 Hb_000373_280 Hb_004097_050--Hb_000373_280 Hb_002107_030 Hb_002107_030 Hb_006913_030--Hb_002107_030 Hb_003226_180 Hb_003226_180 Hb_006913_030--Hb_003226_180 Hb_002499_040 Hb_002499_040 Hb_006913_030--Hb_002499_040 Hb_000365_120 Hb_000365_120 Hb_006913_030--Hb_000365_120 Hb_003158_010 Hb_003158_010 Hb_006913_030--Hb_003158_010 Hb_002942_190 Hb_002942_190 Hb_006913_030--Hb_002942_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.6279 37.7622 37.5584 27.0613 87.1856 79.3878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.1339 100.418 63.0871 86.8089 101.442

CAGE analysis