Hb_012022_080

Information

Type -
Description -
Location Contig12022: 107471-113492
Sequence    

Annotation

kegg
ID rcu:RCOM_0643630
description ubiquitin-protein ligase, putative
nr
ID XP_002528092.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q4FE47
description Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana GN=XBAT35 PE=2 SV=1
trembl
ID B9SQ23
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0643630 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring u-box superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06274: 107546-113381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_080 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_000190_090 0.0561232652 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
3 Hb_000159_120 0.0759697711 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
4 Hb_025336_020 0.0818342834 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
5 Hb_021576_010 0.0828805426 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
6 Hb_000327_250 0.0831739688 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
7 Hb_011224_160 0.0848304566 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
8 Hb_001828_180 0.0857796374 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
9 Hb_042474_010 0.0876649993 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
10 Hb_008226_070 0.0877421452 - - PREDICTED: expansin-A8 [Jatropha curcas]
11 Hb_004096_110 0.0905701138 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
12 Hb_016347_010 0.0937911759 - - protein transporter, putative [Ricinus communis]
13 Hb_002301_100 0.0951558018 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
14 Hb_004880_150 0.0964030355 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
15 Hb_001493_150 0.097288233 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
16 Hb_000363_190 0.0989281084 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
17 Hb_003777_290 0.0992499369 - - polypyrimidine tract binding protein, putative [Ricinus communis]
18 Hb_107298_010 0.1009289699 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
19 Hb_000088_270 0.1010789262 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
20 Hb_001221_020 0.1011116946 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]

Gene co-expression network

sample Hb_012022_080 Hb_012022_080 Hb_000190_090 Hb_000190_090 Hb_012022_080--Hb_000190_090 Hb_000159_120 Hb_000159_120 Hb_012022_080--Hb_000159_120 Hb_025336_020 Hb_025336_020 Hb_012022_080--Hb_025336_020 Hb_021576_010 Hb_021576_010 Hb_012022_080--Hb_021576_010 Hb_000327_250 Hb_000327_250 Hb_012022_080--Hb_000327_250 Hb_011224_160 Hb_011224_160 Hb_012022_080--Hb_011224_160 Hb_042474_010 Hb_042474_010 Hb_000190_090--Hb_042474_010 Hb_004096_110 Hb_004096_110 Hb_000190_090--Hb_004096_110 Hb_000190_090--Hb_011224_160 Hb_000190_090--Hb_021576_010 Hb_016347_010 Hb_016347_010 Hb_000190_090--Hb_016347_010 Hb_008226_070 Hb_008226_070 Hb_000159_120--Hb_008226_070 Hb_003906_170 Hb_003906_170 Hb_000159_120--Hb_003906_170 Hb_001019_050 Hb_001019_050 Hb_000159_120--Hb_001019_050 Hb_001221_020 Hb_001221_020 Hb_000159_120--Hb_001221_020 Hb_107298_010 Hb_107298_010 Hb_000159_120--Hb_107298_010 Hb_000088_270 Hb_000088_270 Hb_025336_020--Hb_000088_270 Hb_007423_050 Hb_007423_050 Hb_025336_020--Hb_007423_050 Hb_025336_020--Hb_001019_050 Hb_000008_420 Hb_000008_420 Hb_025336_020--Hb_000008_420 Hb_005489_140 Hb_005489_140 Hb_025336_020--Hb_005489_140 Hb_000979_220 Hb_000979_220 Hb_021576_010--Hb_000979_220 Hb_021576_010--Hb_004096_110 Hb_003777_290 Hb_003777_290 Hb_021576_010--Hb_003777_290 Hb_021576_010--Hb_000327_250 Hb_021576_010--Hb_016347_010 Hb_001828_180 Hb_001828_180 Hb_021576_010--Hb_001828_180 Hb_003544_030 Hb_003544_030 Hb_000327_250--Hb_003544_030 Hb_000327_250--Hb_016347_010 Hb_005663_110 Hb_005663_110 Hb_000327_250--Hb_005663_110 Hb_000327_250--Hb_004096_110 Hb_001434_080 Hb_001434_080 Hb_000327_250--Hb_001434_080 Hb_000510_340 Hb_000510_340 Hb_011224_160--Hb_000510_340 Hb_000347_450 Hb_000347_450 Hb_011224_160--Hb_000347_450 Hb_011224_160--Hb_000088_270 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_011224_160--Hb_021576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03429 3.71942 4.45698 6.53925 2.6932 3.24453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.19295 4.56215 2.81123 11.9031 4.95206

CAGE analysis