Hb_012022_090

Information

Type -
Description -
Location Contig12022: 122871-129835
Sequence    

Annotation

kegg
ID cic:CICLE_v10011517mg
description hypothetical protein
nr
ID XP_012486224.1
description PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
swissprot
ID Q9M028
description LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1
trembl
ID A0A0D2QC92
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G182500 PE=4 SV=1
Gene Ontology
ID GO:0005886
description limr family protein at5g01460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06276: 122847-129736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_090 0.0 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
2 Hb_002811_060 0.0511888186 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
3 Hb_000213_010 0.0563213753 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
4 Hb_000116_500 0.0631221771 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
5 Hb_009548_020 0.0641953006 - - structural constituent of cell wall, putative [Ricinus communis]
6 Hb_001143_160 0.0665576269 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
7 Hb_002942_100 0.067099485 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
8 Hb_007803_050 0.0675240513 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
9 Hb_003253_040 0.0691109946 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
10 Hb_000890_210 0.0704870438 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
11 Hb_005054_100 0.0705865357 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
12 Hb_002213_070 0.0706855677 - - epsilon-adaptin family protein [Populus trichocarpa]
13 Hb_005065_010 0.0730402088 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
14 Hb_001199_100 0.0730549156 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
15 Hb_002740_180 0.0741281552 - - conserved hypothetical protein [Ricinus communis]
16 Hb_123903_010 0.0743435722 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
17 Hb_002025_020 0.0746327264 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
18 Hb_006634_070 0.0752557859 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
19 Hb_021297_050 0.0755978947 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
20 Hb_000127_040 0.0756158206 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_012022_090 Hb_012022_090 Hb_002811_060 Hb_002811_060 Hb_012022_090--Hb_002811_060 Hb_000213_010 Hb_000213_010 Hb_012022_090--Hb_000213_010 Hb_000116_500 Hb_000116_500 Hb_012022_090--Hb_000116_500 Hb_009548_020 Hb_009548_020 Hb_012022_090--Hb_009548_020 Hb_001143_160 Hb_001143_160 Hb_012022_090--Hb_001143_160 Hb_002942_100 Hb_002942_100 Hb_012022_090--Hb_002942_100 Hb_005054_100 Hb_005054_100 Hb_002811_060--Hb_005054_100 Hb_002811_060--Hb_000116_500 Hb_003988_010 Hb_003988_010 Hb_002811_060--Hb_003988_010 Hb_000608_320 Hb_000608_320 Hb_002811_060--Hb_000608_320 Hb_006660_010 Hb_006660_010 Hb_002811_060--Hb_006660_010 Hb_000029_300 Hb_000029_300 Hb_000213_010--Hb_000029_300 Hb_001221_080 Hb_001221_080 Hb_000213_010--Hb_001221_080 Hb_021297_050 Hb_021297_050 Hb_000213_010--Hb_021297_050 Hb_003683_020 Hb_003683_020 Hb_000213_010--Hb_003683_020 Hb_000213_010--Hb_000116_500 Hb_009545_100 Hb_009545_100 Hb_000116_500--Hb_009545_100 Hb_000116_500--Hb_021297_050 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_001195_320 Hb_001195_320 Hb_000116_500--Hb_001195_320 Hb_188063_020 Hb_188063_020 Hb_009548_020--Hb_188063_020 Hb_002835_370 Hb_002835_370 Hb_009548_020--Hb_002835_370 Hb_000072_220 Hb_000072_220 Hb_009548_020--Hb_000072_220 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_123352_020 Hb_123352_020 Hb_001143_160--Hb_123352_020 Hb_000123_210 Hb_000123_210 Hb_001143_160--Hb_000123_210 Hb_007163_090 Hb_007163_090 Hb_001143_160--Hb_007163_090 Hb_000225_040 Hb_000225_040 Hb_001143_160--Hb_000225_040 Hb_001493_030 Hb_001493_030 Hb_001143_160--Hb_001493_030 Hb_000011_200 Hb_000011_200 Hb_001143_160--Hb_000011_200 Hb_003253_040 Hb_003253_040 Hb_002942_100--Hb_003253_040 Hb_002311_040 Hb_002311_040 Hb_002942_100--Hb_002311_040 Hb_006915_030 Hb_006915_030 Hb_002942_100--Hb_006915_030 Hb_004143_130 Hb_004143_130 Hb_002942_100--Hb_004143_130 Hb_001341_170 Hb_001341_170 Hb_002942_100--Hb_001341_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3268 24.4299 15.2729 27.7473 32.9285 36
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.9341 16.9017 36.9926 26.7804 21.907

CAGE analysis