Hb_012022_160

Information

Type -
Description -
Location Contig12022: 209803-213220
Sequence    

Annotation

kegg
ID rcu:RCOM_0644140
description protein binding protein, putative
nr
ID XP_012087870.1
description PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
swissprot
ID Q5ZM74
description RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
trembl
ID A0A067JY32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25023 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06285: 209865-210900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_160 0.0 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
2 Hb_000428_050 0.070149393 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X2 [Jatropha curcas]
3 Hb_004310_150 0.0757599067 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
4 Hb_003010_030 0.0763649599 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
5 Hb_000093_160 0.0776417769 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
6 Hb_006185_050 0.0780446276 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
7 Hb_001195_760 0.0785552367 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
8 Hb_000089_220 0.0785756089 - - PREDICTED: protein FAM133-like [Populus euphratica]
9 Hb_000120_790 0.0787473496 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
10 Hb_002154_120 0.0796664397 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
11 Hb_120410_010 0.080678808 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
12 Hb_001776_140 0.0807162469 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_000340_300 0.0818887302 - - methyl-CpG-binding domain-containing family protein [Populus trichocarpa]
14 Hb_001481_170 0.0835523035 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005618_160 0.0837409673 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
16 Hb_003030_070 0.0842656581 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
17 Hb_000275_170 0.0845654615 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
18 Hb_000152_380 0.0860067903 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
19 Hb_003406_010 0.0869112513 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
20 Hb_003929_250 0.0869318727 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]

Gene co-expression network

sample Hb_012022_160 Hb_012022_160 Hb_000428_050 Hb_000428_050 Hb_012022_160--Hb_000428_050 Hb_004310_150 Hb_004310_150 Hb_012022_160--Hb_004310_150 Hb_003010_030 Hb_003010_030 Hb_012022_160--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_012022_160--Hb_000093_160 Hb_006185_050 Hb_006185_050 Hb_012022_160--Hb_006185_050 Hb_001195_760 Hb_001195_760 Hb_012022_160--Hb_001195_760 Hb_001776_140 Hb_001776_140 Hb_000428_050--Hb_001776_140 Hb_000010_330 Hb_000010_330 Hb_000428_050--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_000428_050--Hb_007904_200 Hb_003195_070 Hb_003195_070 Hb_000428_050--Hb_003195_070 Hb_001675_180 Hb_001675_180 Hb_000428_050--Hb_001675_180 Hb_002518_280 Hb_002518_280 Hb_004310_150--Hb_002518_280 Hb_000152_380 Hb_000152_380 Hb_004310_150--Hb_000152_380 Hb_004032_430 Hb_004032_430 Hb_004310_150--Hb_004032_430 Hb_004310_150--Hb_000093_160 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280 Hb_003010_030--Hb_000093_160 Hb_096563_010 Hb_096563_010 Hb_003010_030--Hb_096563_010 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_001258_090 Hb_001258_090 Hb_003010_030--Hb_001258_090 Hb_000120_790 Hb_000120_790 Hb_003010_030--Hb_000120_790 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220 Hb_003428_030 Hb_003428_030 Hb_000093_160--Hb_003428_030 Hb_000093_160--Hb_096563_010 Hb_000093_160--Hb_000120_790 Hb_000093_160--Hb_001258_090 Hb_001305_010 Hb_001305_010 Hb_006185_050--Hb_001305_010 Hb_000392_300 Hb_000392_300 Hb_006185_050--Hb_000392_300 Hb_006185_050--Hb_000089_220 Hb_000327_120 Hb_000327_120 Hb_006185_050--Hb_000327_120 Hb_001595_030 Hb_001595_030 Hb_006185_050--Hb_001595_030 Hb_003175_010 Hb_003175_010 Hb_006185_050--Hb_003175_010 Hb_003683_050 Hb_003683_050 Hb_001195_760--Hb_003683_050 Hb_000340_300 Hb_000340_300 Hb_001195_760--Hb_000340_300 Hb_000661_250 Hb_000661_250 Hb_001195_760--Hb_000661_250 Hb_001195_760--Hb_000089_220 Hb_003406_010 Hb_003406_010 Hb_001195_760--Hb_003406_010 Hb_148912_010 Hb_148912_010 Hb_001195_760--Hb_148912_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.8494 16.9208 17.0842 15.0564 34.4788 33.4146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0598 31.7813 21.3142 9.36363 14.6947

CAGE analysis