Hb_012022_170

Information

Type transcription factor
Description TF Family: HMG
Location Contig12022: 214354-217608
Sequence    

Annotation

kegg
ID rcu:RCOM_0644150
description DNA-binding protein MNB1B, putative
nr
ID XP_002528104.1
description DNA-binding protein MNB1B, putative [Ricinus communis]
swissprot
ID O49595
description High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1
trembl
ID B9SQ35
description DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0644150 PE=4 SV=1
Gene Ontology
ID GO:0005634
description high mobility group b protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06289: 214489-217561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_170 0.0 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
2 Hb_140627_010 0.1138494392 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000140_270 0.1164457345 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
4 Hb_000035_480 0.1420764787 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
5 Hb_001240_010 0.1424737628 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
6 Hb_003020_260 0.1503379748 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
7 Hb_100886_010 0.152124972 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_019040_030 0.1564740599 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
9 Hb_002131_030 0.1621065727 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
10 Hb_000403_070 0.1636406499 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000072_200 0.1645449446 - - PREDICTED: myb-like protein X [Jatropha curcas]
12 Hb_000457_290 0.1647745056 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
13 Hb_000077_150 0.1692076106 - - PREDICTED: riboflavin synthase [Jatropha curcas]
14 Hb_020025_010 0.1703229291 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
15 Hb_000465_070 0.172522589 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
16 Hb_011457_050 0.1727768168 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
17 Hb_002811_150 0.1728529197 - - PREDICTED: uncharacterized protein LOC105647666 [Jatropha curcas]
18 Hb_007741_100 0.1728837509 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
19 Hb_001824_090 0.1729411605 - - -
20 Hb_001575_060 0.1739122394 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_012022_170 Hb_012022_170 Hb_140627_010 Hb_140627_010 Hb_012022_170--Hb_140627_010 Hb_000140_270 Hb_000140_270 Hb_012022_170--Hb_000140_270 Hb_000035_480 Hb_000035_480 Hb_012022_170--Hb_000035_480 Hb_001240_010 Hb_001240_010 Hb_012022_170--Hb_001240_010 Hb_003020_260 Hb_003020_260 Hb_012022_170--Hb_003020_260 Hb_100886_010 Hb_100886_010 Hb_012022_170--Hb_100886_010 Hb_140627_010--Hb_000035_480 Hb_000403_070 Hb_000403_070 Hb_140627_010--Hb_000403_070 Hb_000457_290 Hb_000457_290 Hb_140627_010--Hb_000457_290 Hb_140627_010--Hb_001240_010 Hb_006846_150 Hb_006846_150 Hb_140627_010--Hb_006846_150 Hb_000392_550 Hb_000392_550 Hb_140627_010--Hb_000392_550 Hb_000140_270--Hb_140627_010 Hb_007741_100 Hb_007741_100 Hb_000140_270--Hb_007741_100 Hb_027298_010 Hb_027298_010 Hb_000140_270--Hb_027298_010 Hb_019762_050 Hb_019762_050 Hb_000140_270--Hb_019762_050 Hb_000140_270--Hb_000457_290 Hb_000465_070 Hb_000465_070 Hb_000035_480--Hb_000465_070 Hb_000035_480--Hb_000457_290 Hb_000035_480--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000035_480--Hb_001892_070 Hb_000035_480--Hb_000392_550 Hb_001240_010--Hb_000403_070 Hb_000107_150 Hb_000107_150 Hb_001240_010--Hb_000107_150 Hb_001575_060 Hb_001575_060 Hb_001240_010--Hb_001575_060 Hb_003050_250 Hb_003050_250 Hb_001240_010--Hb_003050_250 Hb_011457_050 Hb_011457_050 Hb_001240_010--Hb_011457_050 Hb_018272_020 Hb_018272_020 Hb_003020_260--Hb_018272_020 Hb_000289_110 Hb_000289_110 Hb_003020_260--Hb_000289_110 Hb_002014_030 Hb_002014_030 Hb_003020_260--Hb_002014_030 Hb_003020_260--Hb_000107_150 Hb_001366_180 Hb_001366_180 Hb_003020_260--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_003020_260--Hb_025098_010 Hb_100886_010--Hb_000465_070 Hb_100886_010--Hb_000035_480 Hb_100886_010--Hb_140627_010 Hb_000072_200 Hb_000072_200 Hb_100886_010--Hb_000072_200 Hb_100886_010--Hb_003020_260 Hb_100886_010--Hb_000457_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06794 7.39205 12.9235 14.294 6.66969 13.0521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.3302 42.1428 22.9773 20.0687 50.8732

CAGE analysis