Hb_012023_010

Information

Type -
Description -
Location Contig12023: 11734-17022
Sequence    

Annotation

kegg
ID rcu:RCOM_1341360
description hypothetical protein
nr
ID XP_002515114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMX5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341360 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06290: 10935-11122 , PASA_asmbl_06293: 14927-15354 , PASA_asmbl_06294: 14035-14222 , PASA_asmbl_06295: 12051-12179
cDNA
(Sanger)
(ID:Location)		 050_E12r.ab1: 11162-17760

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012023_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010812_140 0.1406811224 - - protein binding protein, putative [Ricinus communis]
3 Hb_006096_020 0.1489942151 - - Os06g0343500 [Oryza sativa Japonica Group]
4 Hb_001619_010 0.1496218969 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
5 Hb_000059_080 0.1540724385 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
6 Hb_000600_080 0.1648295303 - - -
7 Hb_001677_230 0.1720114939 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
8 Hb_007320_020 0.1720989028 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
9 Hb_009230_020 0.1751243665 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
10 Hb_003767_010 0.1782630628 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
11 Hb_001411_100 0.1816924873 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
12 Hb_109489_010 0.1908654345 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
13 Hb_001519_240 0.1910744122 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_003212_010 0.1911078971 - - sucrose transporter 4 [Hevea brasiliensis]
15 Hb_000685_140 0.1914552839 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
16 Hb_000685_040 0.1967562771 - - hypothetical protein OsJ_17676 [Oryza sativa Japonica Group]
17 Hb_011242_070 0.1971565166 - - beta-cyanoalanine synthase [Hevea brasiliensis]
18 Hb_005470_040 0.1981169467 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
19 Hb_029866_110 0.198712104 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
20 Hb_000264_340 0.1988455827 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012023_010 Hb_012023_010 Hb_010812_140 Hb_010812_140 Hb_012023_010--Hb_010812_140 Hb_006096_020 Hb_006096_020 Hb_012023_010--Hb_006096_020 Hb_001619_010 Hb_001619_010 Hb_012023_010--Hb_001619_010 Hb_000059_080 Hb_000059_080 Hb_012023_010--Hb_000059_080 Hb_000600_080 Hb_000600_080 Hb_012023_010--Hb_000600_080 Hb_001677_230 Hb_001677_230 Hb_012023_010--Hb_001677_230 Hb_000685_040 Hb_000685_040 Hb_010812_140--Hb_000685_040 Hb_007320_020 Hb_007320_020 Hb_010812_140--Hb_007320_020 Hb_010812_140--Hb_001619_010 Hb_003767_010 Hb_003767_010 Hb_010812_140--Hb_003767_010 Hb_031949_010 Hb_031949_010 Hb_010812_140--Hb_031949_010 Hb_000816_020 Hb_000816_020 Hb_006096_020--Hb_000816_020 Hb_006096_020--Hb_001677_230 Hb_006096_020--Hb_001619_010 Hb_082683_010 Hb_082683_010 Hb_006096_020--Hb_082683_010 Hb_006096_020--Hb_000059_080 Hb_001619_010--Hb_001677_230 Hb_005016_120 Hb_005016_120 Hb_001619_010--Hb_005016_120 Hb_001963_110 Hb_001963_110 Hb_001619_010--Hb_001963_110 Hb_003212_010 Hb_003212_010 Hb_000059_080--Hb_003212_010 Hb_000059_080--Hb_007320_020 Hb_000059_080--Hb_003767_010 Hb_000264_340 Hb_000264_340 Hb_000059_080--Hb_000264_340 Hb_005470_040 Hb_005470_040 Hb_000059_080--Hb_005470_040 Hb_109489_010 Hb_109489_010 Hb_000059_080--Hb_109489_010 Hb_000685_140 Hb_000685_140 Hb_000600_080--Hb_000685_140 Hb_072173_010 Hb_072173_010 Hb_000600_080--Hb_072173_010 Hb_001411_100 Hb_001411_100 Hb_000600_080--Hb_001411_100 Hb_000101_320 Hb_000101_320 Hb_000600_080--Hb_000101_320 Hb_000600_080--Hb_031949_010 Hb_000959_370 Hb_000959_370 Hb_000600_080--Hb_000959_370 Hb_002888_060 Hb_002888_060 Hb_001677_230--Hb_002888_060 Hb_001677_230--Hb_082683_010 Hb_001677_230--Hb_001963_110 Hb_033594_100 Hb_033594_100 Hb_001677_230--Hb_033594_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.346651 0.0563493 0.119881 0 0.0272977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0434822 0 0.613105 0.619427

CAGE analysis