Hb_012035_010

Information

Type -
Description -
Location Contig12035: 6110-7345
Sequence    

Annotation

kegg
ID pop:POPTR_0004s00270g
description leucine-rich repeat family protein
nr
ID KDP20672.1
description hypothetical protein JCGZ_21143 [Jatropha curcas]
swissprot
ID Q00874
description DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2
trembl
ID A0A067JA93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21143 PE=4 SV=1
Gene Ontology
ID GO:0005515
description leucine-rich repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06303: 6320-7306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012035_010 0.0 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
2 Hb_007850_020 0.0326764255 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000985_160 0.0544709751 - - PREDICTED: cytochrome P450 724B1-like [Jatropha curcas]
4 Hb_000487_080 0.0559416019 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
5 Hb_004204_060 0.0663485857 transcription factor TF Family: NAC NAC transcription factor 058, partial [Jatropha curcas]
6 Hb_016734_100 0.0725456205 - - -
7 Hb_008147_020 0.0729075476 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
8 Hb_001652_100 0.0735875908 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
9 Hb_001426_020 0.0744419128 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
10 Hb_001031_140 0.0747217847 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
11 Hb_001642_020 0.0758019826 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
12 Hb_002043_020 0.0759531756 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
13 Hb_000538_090 0.0760656624 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
14 Hb_002078_330 0.0805214394 - - lipid binding protein, putative [Ricinus communis]
15 Hb_000321_110 0.08149457 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
16 Hb_000000_390 0.0835597498 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
17 Hb_008021_060 0.0853033659 - - Squalene monooxygenase, putative [Ricinus communis]
18 Hb_001141_180 0.0870632435 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
19 Hb_002704_060 0.0898813115 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
20 Hb_003911_050 0.0944657798 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]

Gene co-expression network

sample Hb_012035_010 Hb_012035_010 Hb_007850_020 Hb_007850_020 Hb_012035_010--Hb_007850_020 Hb_000985_160 Hb_000985_160 Hb_012035_010--Hb_000985_160 Hb_000487_080 Hb_000487_080 Hb_012035_010--Hb_000487_080 Hb_004204_060 Hb_004204_060 Hb_012035_010--Hb_004204_060 Hb_016734_100 Hb_016734_100 Hb_012035_010--Hb_016734_100 Hb_008147_020 Hb_008147_020 Hb_012035_010--Hb_008147_020 Hb_007850_020--Hb_000985_160 Hb_007850_020--Hb_004204_060 Hb_007850_020--Hb_000487_080 Hb_002078_330 Hb_002078_330 Hb_007850_020--Hb_002078_330 Hb_002043_020 Hb_002043_020 Hb_007850_020--Hb_002043_020 Hb_000985_160--Hb_004204_060 Hb_000985_160--Hb_002043_020 Hb_000985_160--Hb_002078_330 Hb_000985_160--Hb_008147_020 Hb_001426_020 Hb_001426_020 Hb_000487_080--Hb_001426_020 Hb_000487_080--Hb_016734_100 Hb_001642_020 Hb_001642_020 Hb_000487_080--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_000487_080--Hb_001031_140 Hb_163566_010 Hb_163566_010 Hb_000487_080--Hb_163566_010 Hb_000152_350 Hb_000152_350 Hb_004204_060--Hb_000152_350 Hb_012655_010 Hb_012655_010 Hb_004204_060--Hb_012655_010 Hb_004204_060--Hb_002078_330 Hb_016734_100--Hb_001426_020 Hb_016734_100--Hb_001642_020 Hb_016734_100--Hb_001031_140 Hb_007120_120 Hb_007120_120 Hb_016734_100--Hb_007120_120 Hb_009663_020 Hb_009663_020 Hb_016734_100--Hb_009663_020 Hb_008147_020--Hb_002043_020 Hb_008147_020--Hb_002078_330 Hb_002704_060 Hb_002704_060 Hb_008147_020--Hb_002704_060 Hb_001206_110 Hb_001206_110 Hb_008147_020--Hb_001206_110 Hb_008147_020--Hb_001031_140 Hb_000058_180 Hb_000058_180 Hb_008147_020--Hb_000058_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.7025 3.53677 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123348 4.02334

CAGE analysis