Hb_012052_010

Information

Type -
Description -
Location Contig12052: 1974-11295
Sequence    

Annotation

kegg
ID pmum:103323653
description uncharacterized LOC103323653
nr
ID XP_008223881.1
description PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
swissprot
ID Q0JCZ4
description Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1
trembl
ID A0A067L1J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03233 PE=4 SV=1
Gene Ontology
ID GO:0005753
description fiber protein fb15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06361: 3708-10926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012052_010 0.0 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
2 Hb_027472_030 0.1421991085 - - RNA helicase 36, partial [Manihot esculenta]
3 Hb_000007_460 0.1632642873 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
4 Hb_000161_120 0.1657120282 - - unnamed protein product [Vitis vinifera]
5 Hb_033363_070 0.1674430758 - - PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
6 Hb_003581_010 0.1796567949 - - hypothetical protein VITISV_004687 [Vitis vinifera]
7 Hb_005054_070 0.1885868574 - - unnamed protein product [Vitis vinifera]
8 Hb_136731_010 0.1902961219 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
9 Hb_000001_040 0.1924849039 - - unnamed protein product [Coffea canephora]
10 Hb_001377_180 0.1963174674 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
11 Hb_000051_170 0.1963683703 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
12 Hb_005085_030 0.1968946457 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
13 Hb_000176_120 0.1983021818 - - seryl-tRNA synthetase, putative [Ricinus communis]
14 Hb_005714_130 0.2001278778 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
15 Hb_010504_030 0.2003249091 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
16 Hb_000996_170 0.2032803377 - - unknown [Glycine max]
17 Hb_150360_010 0.2050598947 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
18 Hb_013691_010 0.2050827608 - - PREDICTED: uncharacterized protein LOC103724099, partial [Phoenix dactylifera]
19 Hb_073367_010 0.2063072054 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
20 Hb_005367_010 0.2074859093 - - -

Gene co-expression network

sample Hb_012052_010 Hb_012052_010 Hb_027472_030 Hb_027472_030 Hb_012052_010--Hb_027472_030 Hb_000007_460 Hb_000007_460 Hb_012052_010--Hb_000007_460 Hb_000161_120 Hb_000161_120 Hb_012052_010--Hb_000161_120 Hb_033363_070 Hb_033363_070 Hb_012052_010--Hb_033363_070 Hb_003581_010 Hb_003581_010 Hb_012052_010--Hb_003581_010 Hb_005054_070 Hb_005054_070 Hb_012052_010--Hb_005054_070 Hb_005305_060 Hb_005305_060 Hb_027472_030--Hb_005305_060 Hb_073367_010 Hb_073367_010 Hb_027472_030--Hb_073367_010 Hb_021576_060 Hb_021576_060 Hb_027472_030--Hb_021576_060 Hb_000832_240 Hb_000832_240 Hb_027472_030--Hb_000832_240 Hb_028639_050 Hb_028639_050 Hb_027472_030--Hb_028639_050 Hb_010504_030 Hb_010504_030 Hb_000007_460--Hb_010504_030 Hb_128998_010 Hb_128998_010 Hb_000007_460--Hb_128998_010 Hb_007188_020 Hb_007188_020 Hb_000007_460--Hb_007188_020 Hb_000007_460--Hb_003581_010 Hb_013691_030 Hb_013691_030 Hb_000007_460--Hb_013691_030 Hb_000015_070 Hb_000015_070 Hb_000007_460--Hb_000015_070 Hb_000996_170 Hb_000996_170 Hb_000161_120--Hb_000996_170 Hb_136731_010 Hb_136731_010 Hb_000161_120--Hb_136731_010 Hb_000176_120 Hb_000176_120 Hb_000161_120--Hb_000176_120 Hb_150360_010 Hb_150360_010 Hb_000161_120--Hb_150360_010 Hb_000161_120--Hb_005054_070 Hb_000087_030 Hb_000087_030 Hb_033363_070--Hb_000087_030 Hb_005714_130 Hb_005714_130 Hb_033363_070--Hb_005714_130 Hb_000051_170 Hb_000051_170 Hb_033363_070--Hb_000051_170 Hb_000656_100 Hb_000656_100 Hb_033363_070--Hb_000656_100 Hb_004060_030 Hb_004060_030 Hb_033363_070--Hb_004060_030 Hb_000001_040 Hb_000001_040 Hb_003581_010--Hb_000001_040 Hb_168737_010 Hb_168737_010 Hb_003581_010--Hb_168737_010 Hb_000265_130 Hb_000265_130 Hb_003581_010--Hb_000265_130 Hb_003581_010--Hb_128998_010 Hb_116632_010 Hb_116632_010 Hb_003581_010--Hb_116632_010 Hb_005054_070--Hb_000176_120 Hb_005054_070--Hb_136731_010 Hb_032496_030 Hb_032496_030 Hb_005054_070--Hb_032496_030 Hb_005054_070--Hb_000001_040 Hb_004241_040 Hb_004241_040 Hb_005054_070--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_005054_070--Hb_144898_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.174642 0.140946 0.0698781 0.45142 0.310538 1.48713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.639129 0.585973 0 0.206432 0.161047

CAGE analysis