Hb_012052_030

Information

Type -
Description -
Location Contig12052: 14341-15389
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012052_030 0.0 - - -
2 Hb_007527_030 0.2571319302 - - -
3 Hb_001486_140 0.2680305519 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
4 Hb_004800_210 0.2733687753 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
5 Hb_002367_120 0.2800085066 - - -
6 Hb_057217_010 0.2841001772 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
7 Hb_007441_060 0.2872197451 - - -
8 Hb_001673_110 0.2890168855 - - PREDICTED: RING-H2 finger protein ATL70-like [Pyrus x bretschneideri]
9 Hb_111834_020 0.289791373 - - PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
10 Hb_007885_080 0.2996806284 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
11 Hb_075351_010 0.3020962121 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
12 Hb_029393_020 0.303202526 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
13 Hb_000270_850 0.311868589 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004102_050 0.3130239536 - - JHL25H03.10 [Jatropha curcas]
15 Hb_000803_250 0.3163476003 - - PREDICTED: uncharacterized protein LOC105648317 isoform X1 [Jatropha curcas]
16 Hb_007773_030 0.3180897371 - - -
17 Hb_147996_010 0.3241377313 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
18 Hb_005147_050 0.3259371713 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
19 Hb_172632_020 0.3268501147 - - -
20 Hb_049884_010 0.3302686032 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_012052_030 Hb_012052_030 Hb_007527_030 Hb_007527_030 Hb_012052_030--Hb_007527_030 Hb_001486_140 Hb_001486_140 Hb_012052_030--Hb_001486_140 Hb_004800_210 Hb_004800_210 Hb_012052_030--Hb_004800_210 Hb_002367_120 Hb_002367_120 Hb_012052_030--Hb_002367_120 Hb_057217_010 Hb_057217_010 Hb_012052_030--Hb_057217_010 Hb_007441_060 Hb_007441_060 Hb_012052_030--Hb_007441_060 Hb_004102_050 Hb_004102_050 Hb_007527_030--Hb_004102_050 Hb_000191_160 Hb_000191_160 Hb_007527_030--Hb_000191_160 Hb_006054_020 Hb_006054_020 Hb_007527_030--Hb_006054_020 Hb_007527_030--Hb_001486_140 Hb_002837_100 Hb_002837_100 Hb_007527_030--Hb_002837_100 Hb_005839_100 Hb_005839_100 Hb_001486_140--Hb_005839_100 Hb_001100_030 Hb_001100_030 Hb_001486_140--Hb_001100_030 Hb_001486_140--Hb_004102_050 Hb_147996_010 Hb_147996_010 Hb_001486_140--Hb_147996_010 Hb_000836_610 Hb_000836_610 Hb_001486_140--Hb_000836_610 Hb_001486_140--Hb_006054_020 Hb_011942_030 Hb_011942_030 Hb_004800_210--Hb_011942_030 Hb_049884_010 Hb_049884_010 Hb_004800_210--Hb_049884_010 Hb_000164_090 Hb_000164_090 Hb_004800_210--Hb_000164_090 Hb_002897_020 Hb_002897_020 Hb_004800_210--Hb_002897_020 Hb_000540_220 Hb_000540_220 Hb_004800_210--Hb_000540_220 Hb_000407_060 Hb_000407_060 Hb_002367_120--Hb_000407_060 Hb_172632_020 Hb_172632_020 Hb_002367_120--Hb_172632_020 Hb_000175_550 Hb_000175_550 Hb_002367_120--Hb_000175_550 Hb_002367_120--Hb_057217_010 Hb_002367_120--Hb_147996_010 Hb_029393_020 Hb_029393_020 Hb_002367_120--Hb_029393_020 Hb_057217_010--Hb_172632_020 Hb_004361_030 Hb_004361_030 Hb_057217_010--Hb_004361_030 Hb_001218_080 Hb_001218_080 Hb_057217_010--Hb_001218_080 Hb_000270_850 Hb_000270_850 Hb_057217_010--Hb_000270_850 Hb_126907_010 Hb_126907_010 Hb_057217_010--Hb_126907_010 Hb_007773_030 Hb_007773_030 Hb_007441_060--Hb_007773_030 Hb_007885_080 Hb_007885_080 Hb_007441_060--Hb_007885_080 Hb_007441_060--Hb_000270_850 Hb_133636_010 Hb_133636_010 Hb_007441_060--Hb_133636_010 Hb_001377_500 Hb_001377_500 Hb_007441_060--Hb_001377_500 Hb_000676_030 Hb_000676_030 Hb_007441_060--Hb_000676_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0512898 0.140429 0.0785658 0 0 0.0458964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0776956 0

CAGE analysis