Hb_012052_060

Information

Type -
Description -
Location Contig12052: 25025-25978
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10190g
description POPTRDRAFT_809279; hypothetical protein
nr
ID XP_002325062.1
description hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
swissprot
ID Q9ASW1
description Probable beta-1,3-galactosyltransferase 16 OS=Arabidopsis thaliana GN=B3GALT16 PE=2 SV=1
trembl
ID B9IM04
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10190g PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012052_060 0.0 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
2 Hb_000877_060 0.0865011573 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
3 Hb_004920_040 0.1050706253 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
4 Hb_003106_070 0.1079630756 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
5 Hb_004221_010 0.1141247707 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
6 Hb_006189_010 0.1143436912 - - -
7 Hb_084934_010 0.1161743356 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
8 Hb_002762_060 0.118039173 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
9 Hb_011472_040 0.1207815432 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
10 Hb_157854_010 0.120897711 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
11 Hb_011828_020 0.1223263286 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
12 Hb_003086_020 0.1280669977 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
13 Hb_024835_030 0.129310761 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
14 Hb_003185_020 0.1322959798 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
15 Hb_001248_050 0.1323869052 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
16 Hb_000638_080 0.1329141184 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
17 Hb_004055_010 0.1333499052 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_004657_020 0.1333792704 - - rer1 protein, putative [Ricinus communis]
19 Hb_004012_010 0.1338596795 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
20 Hb_000395_080 0.1339685227 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012052_060 Hb_012052_060 Hb_000877_060 Hb_000877_060 Hb_012052_060--Hb_000877_060 Hb_004920_040 Hb_004920_040 Hb_012052_060--Hb_004920_040 Hb_003106_070 Hb_003106_070 Hb_012052_060--Hb_003106_070 Hb_004221_010 Hb_004221_010 Hb_012052_060--Hb_004221_010 Hb_006189_010 Hb_006189_010 Hb_012052_060--Hb_006189_010 Hb_084934_010 Hb_084934_010 Hb_012052_060--Hb_084934_010 Hb_000877_060--Hb_004221_010 Hb_012022_030 Hb_012022_030 Hb_000877_060--Hb_012022_030 Hb_001248_050 Hb_001248_050 Hb_000877_060--Hb_001248_050 Hb_011828_020 Hb_011828_020 Hb_000877_060--Hb_011828_020 Hb_000720_120 Hb_000720_120 Hb_000877_060--Hb_000720_120 Hb_002762_060 Hb_002762_060 Hb_000877_060--Hb_002762_060 Hb_004920_040--Hb_002762_060 Hb_024835_030 Hb_024835_030 Hb_004920_040--Hb_024835_030 Hb_001138_050 Hb_001138_050 Hb_004920_040--Hb_001138_050 Hb_004012_010 Hb_004012_010 Hb_004920_040--Hb_004012_010 Hb_006775_080 Hb_006775_080 Hb_004920_040--Hb_006775_080 Hb_004920_040--Hb_004221_010 Hb_000768_050 Hb_000768_050 Hb_003106_070--Hb_000768_050 Hb_010883_210 Hb_010883_210 Hb_003106_070--Hb_010883_210 Hb_003106_070--Hb_004920_040 Hb_002495_070 Hb_002495_070 Hb_003106_070--Hb_002495_070 Hb_010449_020 Hb_010449_020 Hb_003106_070--Hb_010449_020 Hb_003185_020 Hb_003185_020 Hb_003106_070--Hb_003185_020 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_004221_010--Hb_002762_060 Hb_004055_010 Hb_004055_010 Hb_004221_010--Hb_004055_010 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_006189_010--Hb_084934_010 Hb_180333_010 Hb_180333_010 Hb_006189_010--Hb_180333_010 Hb_011472_040 Hb_011472_040 Hb_006189_010--Hb_011472_040 Hb_004607_150 Hb_004607_150 Hb_006189_010--Hb_004607_150 Hb_001186_060 Hb_001186_060 Hb_006189_010--Hb_001186_060 Hb_157854_010 Hb_157854_010 Hb_006189_010--Hb_157854_010 Hb_084934_010--Hb_011472_040 Hb_003086_110 Hb_003086_110 Hb_084934_010--Hb_003086_110 Hb_084934_010--Hb_157854_010 Hb_118977_020 Hb_118977_020 Hb_084934_010--Hb_118977_020 Hb_030312_040 Hb_030312_040 Hb_084934_010--Hb_030312_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0769 0.925076 0.163308 0.287971 1.075 1.66194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.58028 2.02929 0.930803 1.31066 0.0861861

CAGE analysis