Hb_012053_020

Information

Type -
Description -
Location Contig12053: 20613-28674
Sequence    

Annotation

kegg
ID cic:CICLE_v10028468mg
description hypothetical protein
nr
ID XP_012076163.1
description PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
swissprot
ID Q058N4
description Magnesium transporter MRS2-11, chloroplastic OS=Arabidopsis thaliana GN=MRS2-11 PE=2 SV=1
trembl
ID A0A067KDP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11229 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter mrs2- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06367: 20929-28674 , PASA_asmbl_06368: 21360-23252 , PASA_asmbl_06370: 24847-25306 , PASA_asmbl_06371: 26790-27557 , PASA_asmbl_06372: 20613-28608
cDNA
(Sanger)
(ID:Location)		 035_H19.ab1: 24221-28426

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012053_020 0.0 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
2 Hb_007317_020 0.1070947321 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
3 Hb_007229_050 0.1115949405 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
4 Hb_000768_150 0.1126432179 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
5 Hb_098533_010 0.1130545491 - - hypothetical protein L484_003492 [Morus notabilis]
6 Hb_036388_010 0.1144912703 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
7 Hb_004326_010 0.1166565189 - - cationic amino acid transporter, putative [Ricinus communis]
8 Hb_001754_050 0.117675046 - - protein arginine n-methyltransferase, putative [Ricinus communis]
9 Hb_009803_020 0.1209134534 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
10 Hb_000157_140 0.1215431096 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_003030_010 0.1251639064 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
12 Hb_000392_250 0.1277570452 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
13 Hb_000941_120 0.1278723558 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
14 Hb_004129_010 0.1302985348 - - aspartate aminotransferase, putative [Ricinus communis]
15 Hb_000590_070 0.1305892734 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
16 Hb_007537_030 0.1317731561 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
17 Hb_009193_010 0.1339403514 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
18 Hb_000116_240 0.1351572362 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
19 Hb_035834_010 0.1363393362 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000115_360 0.1367606357 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_012053_020 Hb_012053_020 Hb_007317_020 Hb_007317_020 Hb_012053_020--Hb_007317_020 Hb_007229_050 Hb_007229_050 Hb_012053_020--Hb_007229_050 Hb_000768_150 Hb_000768_150 Hb_012053_020--Hb_000768_150 Hb_098533_010 Hb_098533_010 Hb_012053_020--Hb_098533_010 Hb_036388_010 Hb_036388_010 Hb_012053_020--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_012053_020--Hb_004326_010 Hb_005854_040 Hb_005854_040 Hb_007317_020--Hb_005854_040 Hb_000254_070 Hb_000254_070 Hb_007317_020--Hb_000254_070 Hb_000157_140 Hb_000157_140 Hb_007317_020--Hb_000157_140 Hb_007317_020--Hb_098533_010 Hb_010381_020 Hb_010381_020 Hb_007317_020--Hb_010381_020 Hb_001473_170 Hb_001473_170 Hb_007317_020--Hb_001473_170 Hb_006185_030 Hb_006185_030 Hb_007229_050--Hb_006185_030 Hb_004129_010 Hb_004129_010 Hb_007229_050--Hb_004129_010 Hb_001235_130 Hb_001235_130 Hb_007229_050--Hb_001235_130 Hb_007229_050--Hb_098533_010 Hb_007229_050--Hb_000157_140 Hb_000256_160 Hb_000256_160 Hb_007229_050--Hb_000256_160 Hb_000768_150--Hb_036388_010 Hb_030312_030 Hb_030312_030 Hb_000768_150--Hb_030312_030 Hb_009803_020 Hb_009803_020 Hb_000768_150--Hb_009803_020 Hb_000768_150--Hb_004326_010 Hb_000997_320 Hb_000997_320 Hb_000768_150--Hb_000997_320 Hb_098533_010--Hb_009803_020 Hb_098533_010--Hb_006185_030 Hb_098533_010--Hb_001473_170 Hb_009535_030 Hb_009535_030 Hb_098533_010--Hb_009535_030 Hb_035834_010 Hb_035834_010 Hb_036388_010--Hb_035834_010 Hb_003783_050 Hb_003783_050 Hb_036388_010--Hb_003783_050 Hb_036388_010--Hb_000997_320 Hb_006736_050 Hb_006736_050 Hb_036388_010--Hb_006736_050 Hb_000417_380 Hb_000417_380 Hb_036388_010--Hb_000417_380 Hb_007537_030 Hb_007537_030 Hb_004326_010--Hb_007537_030 Hb_000570_020 Hb_000570_020 Hb_004326_010--Hb_000570_020 Hb_004326_010--Hb_000157_140 Hb_000181_460 Hb_000181_460 Hb_004326_010--Hb_000181_460 Hb_000120_740 Hb_000120_740 Hb_004326_010--Hb_000120_740 Hb_001105_130 Hb_001105_130 Hb_004326_010--Hb_001105_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2716 5.91169 16.2399 24.6356 2.75772 1.22259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.8358 4.23077 2.82124 17.9994 20.9376

CAGE analysis