Hb_012053_070

Information

Type -
Description -
Location Contig12053: 74281-78522
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15260g
description POPTRDRAFT_804043; hypothetical protein
nr
ID XP_012076175.1
description PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11238 PE=4 SV=1
Gene Ontology
ID GO:0005739
description reticulata-related 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06386: 74464-78311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012053_070 0.0 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
2 Hb_000331_450 0.0639178026 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
3 Hb_000221_160 0.065155018 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
4 Hb_158467_010 0.0688352793 - - transporter, putative [Ricinus communis]
5 Hb_001105_070 0.0691955233 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
6 Hb_159809_020 0.0693933442 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_032202_190 0.0695021264 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
8 Hb_001369_690 0.0695213039 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
9 Hb_002061_040 0.0717456023 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
10 Hb_001059_030 0.0718493861 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
11 Hb_015807_040 0.0724744562 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
12 Hb_003125_010 0.0732051986 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
13 Hb_004254_120 0.0735670269 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005305_080 0.075717498 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
15 Hb_065525_020 0.0763238262 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
16 Hb_172426_040 0.0768077845 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
17 Hb_001833_110 0.0771413427 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000705_210 0.0772540932 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
19 Hb_003918_010 0.0775271084 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
20 Hb_000270_370 0.0781503636 - - Uncharacterized protein TCM_011954 [Theobroma cacao]

Gene co-expression network

sample Hb_012053_070 Hb_012053_070 Hb_000331_450 Hb_000331_450 Hb_012053_070--Hb_000331_450 Hb_000221_160 Hb_000221_160 Hb_012053_070--Hb_000221_160 Hb_158467_010 Hb_158467_010 Hb_012053_070--Hb_158467_010 Hb_001105_070 Hb_001105_070 Hb_012053_070--Hb_001105_070 Hb_159809_020 Hb_159809_020 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190 Hb_015807_040 Hb_015807_040 Hb_000331_450--Hb_015807_040 Hb_010042_010 Hb_010042_010 Hb_000331_450--Hb_010042_010 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_017413_010 Hb_017413_010 Hb_000331_450--Hb_017413_010 Hb_003125_010 Hb_003125_010 Hb_000331_450--Hb_003125_010 Hb_003918_010 Hb_003918_010 Hb_000221_160--Hb_003918_010 Hb_000270_370 Hb_000270_370 Hb_000221_160--Hb_000270_370 Hb_000363_360 Hb_000363_360 Hb_000221_160--Hb_000363_360 Hb_000331_200 Hb_000331_200 Hb_000221_160--Hb_000331_200 Hb_033594_150 Hb_033594_150 Hb_000221_160--Hb_033594_150 Hb_032264_110 Hb_032264_110 Hb_158467_010--Hb_032264_110 Hb_000671_090 Hb_000671_090 Hb_158467_010--Hb_000671_090 Hb_065525_020 Hb_065525_020 Hb_158467_010--Hb_065525_020 Hb_000638_250 Hb_000638_250 Hb_158467_010--Hb_000638_250 Hb_009773_020 Hb_009773_020 Hb_158467_010--Hb_009773_020 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_000025_120 Hb_000025_120 Hb_001105_070--Hb_000025_120 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070 Hb_001105_070--Hb_009773_020 Hb_001105_070--Hb_065525_020 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_159809_020--Hb_003599_040 Hb_002284_240 Hb_002284_240 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_000926_250 Hb_000926_250 Hb_159809_020--Hb_000926_250 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_004254_120 Hb_004254_120 Hb_032202_190--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_032202_190--Hb_000876_070 Hb_005618_170 Hb_005618_170 Hb_032202_190--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_032202_190--Hb_005305_080 Hb_007691_030 Hb_007691_030 Hb_032202_190--Hb_007691_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6404 6.84624 6.31534 12.9221 13.8477 13.0383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6163 22.5401 19.5233 10.8746 7.72684

CAGE analysis