Hb_012053_080

Information

Type -
Description -
Location Contig12053: 79923-99317
Sequence    

Annotation

kegg
ID rcu:RCOM_1186100
description AP-2 complex subunit alpha, putative
nr
ID XP_002527437.1
description AP-2 complex subunit alpha, putative [Ricinus communis]
swissprot
ID Q8LPK4
description AP-2 complex subunit alpha-2 OS=Arabidopsis thaliana GN=ALPHAC-AD PE=1 SV=1
trembl
ID B9SN68
description AP-2 complex subunit alpha, putative OS=Ricinus communis GN=RCOM_1186100 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-2 complex subunit alpha-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06388: 80086-99234 , PASA_asmbl_06389: 99245-99343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012053_080 0.0 - - AP-2 complex subunit alpha, putative [Ricinus communis]
2 Hb_001935_110 0.0546177147 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
3 Hb_160459_040 0.0562710269 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
4 Hb_000035_170 0.0570057127 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
5 Hb_027380_140 0.0597867044 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
6 Hb_009296_010 0.0672389273 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
7 Hb_025477_040 0.0695994522 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
8 Hb_000261_030 0.0699960101 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
9 Hb_008024_030 0.0707179731 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
10 Hb_007062_020 0.0720054211 - - gcn4-complementing protein, putative [Ricinus communis]
11 Hb_000470_070 0.0720869421 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
12 Hb_000035_410 0.072195696 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
13 Hb_000462_060 0.0722000024 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
14 Hb_034432_030 0.0725435947 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
15 Hb_000785_040 0.0726642431 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
16 Hb_003645_060 0.075269313 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
17 Hb_002272_130 0.0761751723 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
18 Hb_012395_140 0.076260204 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
19 Hb_001379_110 0.0763245753 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
20 Hb_000563_130 0.0766583918 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]

Gene co-expression network

sample Hb_012053_080 Hb_012053_080 Hb_001935_110 Hb_001935_110 Hb_012053_080--Hb_001935_110 Hb_160459_040 Hb_160459_040 Hb_012053_080--Hb_160459_040 Hb_000035_170 Hb_000035_170 Hb_012053_080--Hb_000035_170 Hb_027380_140 Hb_027380_140 Hb_012053_080--Hb_027380_140 Hb_009296_010 Hb_009296_010 Hb_012053_080--Hb_009296_010 Hb_025477_040 Hb_025477_040 Hb_012053_080--Hb_025477_040 Hb_019654_040 Hb_019654_040 Hb_001935_110--Hb_019654_040 Hb_001427_190 Hb_001427_190 Hb_001935_110--Hb_001427_190 Hb_000333_060 Hb_000333_060 Hb_001935_110--Hb_000333_060 Hb_000470_070 Hb_000470_070 Hb_001935_110--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_001935_110--Hb_002078_100 Hb_005053_010 Hb_005053_010 Hb_160459_040--Hb_005053_010 Hb_009771_110 Hb_009771_110 Hb_160459_040--Hb_009771_110 Hb_000261_030 Hb_000261_030 Hb_160459_040--Hb_000261_030 Hb_002631_140 Hb_002631_140 Hb_160459_040--Hb_002631_140 Hb_028872_070 Hb_028872_070 Hb_160459_040--Hb_028872_070 Hb_006501_090 Hb_006501_090 Hb_000035_170--Hb_006501_090 Hb_000082_070 Hb_000082_070 Hb_000035_170--Hb_000082_070 Hb_003645_060 Hb_003645_060 Hb_000035_170--Hb_003645_060 Hb_000563_130 Hb_000563_130 Hb_000035_170--Hb_000563_130 Hb_001655_030 Hb_001655_030 Hb_000035_170--Hb_001655_030 Hb_002329_040 Hb_002329_040 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_027380_140--Hb_000470_070 Hb_000574_440 Hb_000574_440 Hb_027380_140--Hb_000574_440 Hb_009296_010--Hb_000470_070 Hb_009296_010--Hb_002078_100 Hb_009296_010--Hb_019654_040 Hb_009296_010--Hb_027380_140 Hb_009296_010--Hb_001935_110 Hb_032202_200 Hb_032202_200 Hb_025477_040--Hb_032202_200 Hb_123903_010 Hb_123903_010 Hb_025477_040--Hb_123903_010 Hb_002815_030 Hb_002815_030 Hb_025477_040--Hb_002815_030 Hb_025477_040--Hb_002329_040 Hb_021297_050 Hb_021297_050 Hb_025477_040--Hb_021297_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3753 10.2467 11.1782 10.8895 16.0899 17.2778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.21005 5.25566 8.37082 12.3268 11.9782

CAGE analysis