Hb_012055_070

Information

Type -
Description -
Location Contig12055: 61048-62803
Sequence    

Annotation

kegg
ID rcu:RCOM_1155070
description calcium ion binding protein, putative
nr
ID XP_002524959.1
description calcium ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SG40
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_1155070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06403: 58176-60166 , PASA_asmbl_06404: 61723-62967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012055_070 0.0 - - calcium ion binding protein, putative [Ricinus communis]
2 Hb_001232_060 0.1079365126 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005116_150 0.1196200708 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
4 Hb_007113_060 0.120062631 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
5 Hb_031984_020 0.1226500627 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002200_030 0.1228557544 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
7 Hb_005440_040 0.1230321862 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
8 Hb_003097_160 0.1249187968 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
9 Hb_001269_180 0.1258228421 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
10 Hb_006922_120 0.1268874841 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
11 Hb_000922_400 0.1293392902 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
12 Hb_002471_130 0.1324039624 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
13 Hb_001225_050 0.1389709351 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
14 Hb_009151_010 0.1398933296 - - Peroxidase 3 [Morus notabilis]
15 Hb_132381_010 0.1426061752 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_002997_150 0.1433316146 - - hypothetical protein RCOM_1406750 [Ricinus communis]
17 Hb_000227_360 0.1435143099 - - PREDICTED: mavicyanin [Jatropha curcas]
18 Hb_013749_040 0.143542899 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
19 Hb_007625_010 0.1438395693 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005269_060 0.1441160368 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]

Gene co-expression network

sample Hb_012055_070 Hb_012055_070 Hb_001232_060 Hb_001232_060 Hb_012055_070--Hb_001232_060 Hb_005116_150 Hb_005116_150 Hb_012055_070--Hb_005116_150 Hb_007113_060 Hb_007113_060 Hb_012055_070--Hb_007113_060 Hb_031984_020 Hb_031984_020 Hb_012055_070--Hb_031984_020 Hb_002200_030 Hb_002200_030 Hb_012055_070--Hb_002200_030 Hb_005440_040 Hb_005440_040 Hb_012055_070--Hb_005440_040 Hb_000160_010 Hb_000160_010 Hb_001232_060--Hb_000160_010 Hb_001269_180 Hb_001269_180 Hb_001232_060--Hb_001269_180 Hb_001276_030 Hb_001276_030 Hb_001232_060--Hb_001276_030 Hb_004586_440 Hb_004586_440 Hb_001232_060--Hb_004586_440 Hb_000815_220 Hb_000815_220 Hb_001232_060--Hb_000815_220 Hb_007760_020 Hb_007760_020 Hb_005116_150--Hb_007760_020 Hb_009151_010 Hb_009151_010 Hb_005116_150--Hb_009151_010 Hb_000531_030 Hb_000531_030 Hb_005116_150--Hb_000531_030 Hb_005116_150--Hb_007113_060 Hb_002311_030 Hb_002311_030 Hb_005116_150--Hb_002311_030 Hb_010142_060 Hb_010142_060 Hb_005116_150--Hb_010142_060 Hb_006922_120 Hb_006922_120 Hb_007113_060--Hb_006922_120 Hb_000816_140 Hb_000816_140 Hb_007113_060--Hb_000816_140 Hb_007113_060--Hb_005440_040 Hb_007113_060--Hb_002311_030 Hb_004162_200 Hb_004162_200 Hb_007113_060--Hb_004162_200 Hb_162450_010 Hb_162450_010 Hb_007113_060--Hb_162450_010 Hb_002471_130 Hb_002471_130 Hb_031984_020--Hb_002471_130 Hb_132381_010 Hb_132381_010 Hb_031984_020--Hb_132381_010 Hb_031984_020--Hb_009151_010 Hb_031984_020--Hb_007113_060 Hb_031984_020--Hb_006922_120 Hb_053264_010 Hb_053264_010 Hb_031984_020--Hb_053264_010 Hb_005656_120 Hb_005656_120 Hb_002200_030--Hb_005656_120 Hb_128986_010 Hb_128986_010 Hb_002200_030--Hb_128986_010 Hb_003417_050 Hb_003417_050 Hb_002200_030--Hb_003417_050 Hb_002062_010 Hb_002062_010 Hb_002200_030--Hb_002062_010 Hb_002200_030--Hb_006922_120 Hb_000392_350 Hb_000392_350 Hb_002200_030--Hb_000392_350 Hb_000227_360 Hb_000227_360 Hb_005440_040--Hb_000227_360 Hb_005440_040--Hb_006922_120 Hb_003858_010 Hb_003858_010 Hb_005440_040--Hb_003858_010 Hb_005440_040--Hb_000531_030 Hb_108090_010 Hb_108090_010 Hb_005440_040--Hb_108090_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111463 0.105439 1.19699 4.71439 0.0561885 0.0499919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.102415 0 0.0425061 2.11432

CAGE analysis