Hb_012082_010

Information

Type -
Description -
Location Contig12082: 14487-20036
Sequence    

Annotation

kegg
ID rcu:RCOM_0553900
description bromodomain-containing protein, putative (EC:2.3.1.48)
nr
ID XP_012079041.1
description PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
swissprot
ID Q9LNC4
description Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1
trembl
ID A0A067K9Y5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12239 PE=4 SV=1
Gene Ontology
ID GO:0016746
description transcription factor gte4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06423: 14536-19934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012082_010 0.0 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
2 Hb_044653_020 0.0842115809 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
3 Hb_002485_040 0.0857112449 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
4 Hb_000896_060 0.0864626575 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_003018_040 0.0869938138 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
6 Hb_000218_020 0.0879897633 - - synaptosomal associated protein, putative [Ricinus communis]
7 Hb_000130_280 0.0889678816 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_002282_060 0.0928765225 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
9 Hb_000526_060 0.0943258504 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
10 Hb_000123_350 0.0947083206 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
11 Hb_002073_280 0.0992272722 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
12 Hb_125126_010 0.0997602947 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
13 Hb_007576_220 0.102463582 - - PREDICTED: kanadaptin [Jatropha curcas]
14 Hb_003895_020 0.1037517632 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
15 Hb_007017_070 0.1049531187 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
16 Hb_000227_310 0.1057590966 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
17 Hb_009302_030 0.1057786881 - - hypothetical protein RCOM_1176340 [Ricinus communis]
18 Hb_007193_110 0.1076692601 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
19 Hb_014834_060 0.1084741972 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
20 Hb_000086_050 0.1095614379 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_012082_010 Hb_012082_010 Hb_044653_020 Hb_044653_020 Hb_012082_010--Hb_044653_020 Hb_002485_040 Hb_002485_040 Hb_012082_010--Hb_002485_040 Hb_000896_060 Hb_000896_060 Hb_012082_010--Hb_000896_060 Hb_003018_040 Hb_003018_040 Hb_012082_010--Hb_003018_040 Hb_000218_020 Hb_000218_020 Hb_012082_010--Hb_000218_020 Hb_000130_280 Hb_000130_280 Hb_012082_010--Hb_000130_280 Hb_012368_100 Hb_012368_100 Hb_044653_020--Hb_012368_100 Hb_044653_020--Hb_000896_060 Hb_004785_030 Hb_004785_030 Hb_044653_020--Hb_004785_030 Hb_000117_070 Hb_000117_070 Hb_044653_020--Hb_000117_070 Hb_005188_040 Hb_005188_040 Hb_044653_020--Hb_005188_040 Hb_002387_070 Hb_002387_070 Hb_044653_020--Hb_002387_070 Hb_000123_350 Hb_000123_350 Hb_002485_040--Hb_000123_350 Hb_001865_060 Hb_001865_060 Hb_002485_040--Hb_001865_060 Hb_002774_150 Hb_002774_150 Hb_002485_040--Hb_002774_150 Hb_125126_010 Hb_125126_010 Hb_002485_040--Hb_125126_010 Hb_002485_040--Hb_000896_060 Hb_000526_060 Hb_000526_060 Hb_000896_060--Hb_000526_060 Hb_014834_060 Hb_014834_060 Hb_000896_060--Hb_014834_060 Hb_000896_060--Hb_000117_070 Hb_000896_060--Hb_012368_100 Hb_000896_060--Hb_000123_350 Hb_003018_040--Hb_000218_020 Hb_003018_040--Hb_044653_020 Hb_001454_220 Hb_001454_220 Hb_003018_040--Hb_001454_220 Hb_012038_010 Hb_012038_010 Hb_003018_040--Hb_012038_010 Hb_007017_070 Hb_007017_070 Hb_003018_040--Hb_007017_070 Hb_002282_060 Hb_002282_060 Hb_000218_020--Hb_002282_060 Hb_007576_220 Hb_007576_220 Hb_000218_020--Hb_007576_220 Hb_000218_020--Hb_000526_060 Hb_002073_280 Hb_002073_280 Hb_000218_020--Hb_002073_280 Hb_004899_040 Hb_004899_040 Hb_000130_280--Hb_004899_040 Hb_000130_280--Hb_125126_010 Hb_011161_020 Hb_011161_020 Hb_000130_280--Hb_011161_020 Hb_011249_060 Hb_011249_060 Hb_000130_280--Hb_011249_060 Hb_009302_030 Hb_009302_030 Hb_000130_280--Hb_009302_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6275 55.3604 20.8906 10.8908 18.2059 13.6221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.35688 7.24974 9.12148 10.5611 17.5901

CAGE analysis