Hb_012090_010

Information

Type -
Description -
Location Contig12090: 10148-10744
Sequence    

Annotation

kegg
ID rcu:RCOM_0904330
description hypothetical protein
nr
ID XP_002518475.1
description hypothetical protein RCOM_0904330 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXK6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0904330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012090_010 0.0 - - hypothetical protein RCOM_0904330 [Ricinus communis]
2 Hb_000313_240 0.0005304356 - - hypothetical protein RCOM_0377590 [Ricinus communis]
3 Hb_000331_600 0.0028268753 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
4 Hb_002092_050 0.0055308703 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
5 Hb_065272_010 0.0097904914 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
6 Hb_001304_150 0.0125366144 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_000029_240 0.0149438485 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
8 Hb_154146_010 0.0153825902 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
9 Hb_025161_040 0.0215644098 - - kinase, putative [Ricinus communis]
10 Hb_002391_060 0.0330191901 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
11 Hb_051677_010 0.0338159324 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
12 Hb_001278_010 0.0358581147 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007455_010 0.0374645875 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
14 Hb_000355_020 0.0382264658 - - -
15 Hb_020712_020 0.0474358115 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
16 Hb_002792_040 0.0524183423 - - -
17 Hb_025526_110 0.0562237272 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
18 Hb_002281_030 0.056806851 - - -
19 Hb_041188_010 0.0595377048 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
20 Hb_000552_040 0.0709557896 - - -

Gene co-expression network

sample Hb_012090_010 Hb_012090_010 Hb_000313_240 Hb_000313_240 Hb_012090_010--Hb_000313_240 Hb_000331_600 Hb_000331_600 Hb_012090_010--Hb_000331_600 Hb_002092_050 Hb_002092_050 Hb_012090_010--Hb_002092_050 Hb_065272_010 Hb_065272_010 Hb_012090_010--Hb_065272_010 Hb_001304_150 Hb_001304_150 Hb_012090_010--Hb_001304_150 Hb_000029_240 Hb_000029_240 Hb_012090_010--Hb_000029_240 Hb_000313_240--Hb_000331_600 Hb_000313_240--Hb_002092_050 Hb_000313_240--Hb_065272_010 Hb_000313_240--Hb_001304_150 Hb_154146_010 Hb_154146_010 Hb_000313_240--Hb_154146_010 Hb_000331_600--Hb_002092_050 Hb_000331_600--Hb_065272_010 Hb_000331_600--Hb_000029_240 Hb_000331_600--Hb_001304_150 Hb_002092_050--Hb_065272_010 Hb_002092_050--Hb_000029_240 Hb_025161_040 Hb_025161_040 Hb_002092_050--Hb_025161_040 Hb_065272_010--Hb_000029_240 Hb_065272_010--Hb_025161_040 Hb_001304_150--Hb_154146_010 Hb_001304_150--Hb_002092_050 Hb_001304_150--Hb_065272_010 Hb_000029_240--Hb_025161_040 Hb_000029_240--Hb_000313_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.575774 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0655957 0

CAGE analysis