Hb_012090_030

Information

Type -
Description -
Location Contig12090: 24855-26386
Sequence    

Annotation

kegg
ID gmx:100527884
description uncharacterized LOC100527884
nr
ID XP_008777467.1
description PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
swissprot
ID Q6Z1D5
description Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1
trembl
ID A0A0B2S2C9
description Autophagy-related protein OS=Glycine soja GN=glysoja_015253 PE=3 SV=1
Gene Ontology
ID GO:0006914
description autophagy-related protein 8c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06434: 23697-26396 , PASA_asmbl_06435: 23865-26398 , PASA_asmbl_06436: 25656-25804
cDNA
(Sanger)
(ID:Location)		 010_E08.ab1: 23697-26396

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012090_030 0.0 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
2 Hb_133279_010 0.1775349443 - - spermidine synthase 1, putative [Ricinus communis]
3 Hb_002498_030 0.1847377274 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011861_090 0.190009037 - - PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Jatropha curcas]
5 Hb_000302_320 0.190613534 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
6 Hb_010883_180 0.1910510876 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
7 Hb_019516_070 0.1923194937 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
8 Hb_006157_010 0.1958609115 - - PREDICTED: endoglucanase 5 [Jatropha curcas]
9 Hb_000529_010 0.1975082268 - - cyclin d, putative [Ricinus communis]
10 Hb_000389_040 0.1978439614 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
11 Hb_000328_010 0.1987238808 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
12 Hb_000297_140 0.2021432843 - - hypothetical protein RCOM_0293450 [Ricinus communis]
13 Hb_000496_110 0.202425849 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
14 Hb_002316_080 0.2068195811 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
15 Hb_000438_120 0.2069338835 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_000820_110 0.2076182276 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
17 Hb_007574_040 0.2081546607 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
18 Hb_005695_100 0.2089576827 - - PREDICTED: uncharacterized protein LOC105638839 [Jatropha curcas]
19 Hb_000003_210 0.2109664626 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
20 Hb_166635_010 0.2122283425 - - ptm1, putative [Ricinus communis]

Gene co-expression network

sample Hb_012090_030 Hb_012090_030 Hb_133279_010 Hb_133279_010 Hb_012090_030--Hb_133279_010 Hb_002498_030 Hb_002498_030 Hb_012090_030--Hb_002498_030 Hb_011861_090 Hb_011861_090 Hb_012090_030--Hb_011861_090 Hb_000302_320 Hb_000302_320 Hb_012090_030--Hb_000302_320 Hb_010883_180 Hb_010883_180 Hb_012090_030--Hb_010883_180 Hb_019516_070 Hb_019516_070 Hb_012090_030--Hb_019516_070 Hb_000389_040 Hb_000389_040 Hb_133279_010--Hb_000389_040 Hb_133279_010--Hb_002498_030 Hb_000574_300 Hb_000574_300 Hb_133279_010--Hb_000574_300 Hb_001105_120 Hb_001105_120 Hb_133279_010--Hb_001105_120 Hb_000011_310 Hb_000011_310 Hb_133279_010--Hb_000011_310 Hb_017439_010 Hb_017439_010 Hb_002498_030--Hb_017439_010 Hb_000328_010 Hb_000328_010 Hb_002498_030--Hb_000328_010 Hb_001102_160 Hb_001102_160 Hb_002498_030--Hb_001102_160 Hb_003408_010 Hb_003408_010 Hb_002498_030--Hb_003408_010 Hb_034726_010 Hb_034726_010 Hb_002498_030--Hb_034726_010 Hb_002498_030--Hb_000011_310 Hb_166635_010 Hb_166635_010 Hb_011861_090--Hb_166635_010 Hb_011861_090--Hb_000302_320 Hb_000544_190 Hb_000544_190 Hb_011861_090--Hb_000544_190 Hb_011861_090--Hb_010883_180 Hb_011861_090--Hb_000389_040 Hb_023308_010 Hb_023308_010 Hb_011861_090--Hb_023308_010 Hb_002759_030 Hb_002759_030 Hb_000302_320--Hb_002759_030 Hb_000302_320--Hb_000544_190 Hb_000236_290 Hb_000236_290 Hb_000302_320--Hb_000236_290 Hb_002783_280 Hb_002783_280 Hb_000302_320--Hb_002783_280 Hb_000009_280 Hb_000009_280 Hb_000302_320--Hb_000009_280 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_030565_100 Hb_030565_100 Hb_010883_180--Hb_030565_100 Hb_000260_110 Hb_000260_110 Hb_010883_180--Hb_000260_110 Hb_103942_030 Hb_103942_030 Hb_010883_180--Hb_103942_030 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_000086_090 Hb_000086_090 Hb_010883_180--Hb_000086_090 Hb_000820_110 Hb_000820_110 Hb_019516_070--Hb_000820_110 Hb_019516_070--Hb_000236_290 Hb_003177_040 Hb_003177_040 Hb_019516_070--Hb_003177_040 Hb_001159_230 Hb_001159_230 Hb_019516_070--Hb_001159_230 Hb_005730_060 Hb_005730_060 Hb_019516_070--Hb_005730_060 Hb_001699_080 Hb_001699_080 Hb_019516_070--Hb_001699_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0610156 0.485906 6.69697 24.3669 0 0.10978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14512 1.46177 4.53425 0.703862 10.6252

CAGE analysis