Hb_012092_010

Information

Type -
Description -
Location Contig12092: 2633-5597
Sequence    

Annotation

kegg
ID rcu:RCOM_0340100
description lipoate-protein ligase, putative
nr
ID XP_012074458.1
description PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10016 PE=4 SV=1
Gene Ontology
ID GO:0005737
description lipoate-protein ligase a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06439: 2912-3258 , PASA_asmbl_06440: 3682-5282
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012092_010 0.0 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
2 Hb_000465_430 0.0550021416 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
3 Hb_002391_300 0.062314951 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
4 Hb_002495_040 0.0657882394 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
5 Hb_003030_070 0.0671228036 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
6 Hb_001936_080 0.0719736491 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
7 Hb_001195_760 0.0760176433 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
8 Hb_148912_010 0.0776666628 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010691_060 0.078857639 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
10 Hb_000457_110 0.0815004392 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
11 Hb_009557_070 0.0834352852 - - conserved hypothetical protein [Ricinus communis]
12 Hb_033843_010 0.0834618067 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
13 Hb_001369_180 0.0843778722 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
14 Hb_105386_010 0.0851092498 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
15 Hb_003044_100 0.0857007042 - - hypothetical protein F383_08446 [Gossypium arboreum]
16 Hb_031939_010 0.0857103945 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
17 Hb_023001_050 0.0860764651 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
18 Hb_003406_010 0.0867396693 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
19 Hb_005503_030 0.0872246569 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
20 Hb_002149_020 0.0884380137 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012092_010 Hb_012092_010 Hb_000465_430 Hb_000465_430 Hb_012092_010--Hb_000465_430 Hb_002391_300 Hb_002391_300 Hb_012092_010--Hb_002391_300 Hb_002495_040 Hb_002495_040 Hb_012092_010--Hb_002495_040 Hb_003030_070 Hb_003030_070 Hb_012092_010--Hb_003030_070 Hb_001936_080 Hb_001936_080 Hb_012092_010--Hb_001936_080 Hb_001195_760 Hb_001195_760 Hb_012092_010--Hb_001195_760 Hb_000465_430--Hb_002495_040 Hb_003502_080 Hb_003502_080 Hb_000465_430--Hb_003502_080 Hb_033843_010 Hb_033843_010 Hb_000465_430--Hb_033843_010 Hb_005016_170 Hb_005016_170 Hb_000465_430--Hb_005016_170 Hb_000092_100 Hb_000092_100 Hb_000465_430--Hb_000092_100 Hb_000373_240 Hb_000373_240 Hb_002391_300--Hb_000373_240 Hb_003406_010 Hb_003406_010 Hb_002391_300--Hb_003406_010 Hb_000926_280 Hb_000926_280 Hb_002391_300--Hb_000926_280 Hb_004440_090 Hb_004440_090 Hb_002391_300--Hb_004440_090 Hb_007218_080 Hb_007218_080 Hb_002391_300--Hb_007218_080 Hb_002495_040--Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_002495_040--Hb_001369_180 Hb_002495_040--Hb_000092_100 Hb_002495_040--Hb_001936_080 Hb_003030_070--Hb_001369_180 Hb_003665_060 Hb_003665_060 Hb_003030_070--Hb_003665_060 Hb_000230_560 Hb_000230_560 Hb_003030_070--Hb_000230_560 Hb_007317_110 Hb_007317_110 Hb_003030_070--Hb_007317_110 Hb_003030_070--Hb_002391_300 Hb_003001_120 Hb_003001_120 Hb_001936_080--Hb_003001_120 Hb_028227_020 Hb_028227_020 Hb_001936_080--Hb_028227_020 Hb_009557_070 Hb_009557_070 Hb_001936_080--Hb_009557_070 Hb_001936_080--Hb_000465_430 Hb_003683_050 Hb_003683_050 Hb_001195_760--Hb_003683_050 Hb_000340_300 Hb_000340_300 Hb_001195_760--Hb_000340_300 Hb_000661_250 Hb_000661_250 Hb_001195_760--Hb_000661_250 Hb_000089_220 Hb_000089_220 Hb_001195_760--Hb_000089_220 Hb_001195_760--Hb_003406_010 Hb_148912_010 Hb_148912_010 Hb_001195_760--Hb_148912_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.57952 2.73288 5.63698 4.88008 10.0299 11.9191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.46956 8.06472 5.26611 3.48414 2.46898

CAGE analysis