Hb_012092_040

Information

Type -
Description -
Location Contig12092: 25500-26761
Sequence    

Annotation

kegg
ID rcu:RCOM_0299840
description Alpha-expansin 5 precursor, putative
nr
ID XP_012084718.1
description PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
swissprot
ID O80622
description Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2
trembl
ID A0A067JWH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19862 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin s1 precursor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06442: 25445-26860
cDNA
(Sanger)
(ID:Location)		 002_D20.ab1: 25725-26860 , 014_L20.ab1: 25873-26860 , 014_N09.ab1: 25466-25654

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012092_040 0.0 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
2 Hb_000089_090 0.0481250759 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
3 Hb_001247_060 0.0612257228 - - zinc finger protein, putative [Ricinus communis]
4 Hb_089140_070 0.0778835521 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
5 Hb_000035_230 0.0799265697 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
6 Hb_003464_010 0.0809612371 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000390_010 0.0943771389 - - PREDICTED: protein CDI [Jatropha curcas]
8 Hb_002970_030 0.099103132 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010080_050 0.1036079516 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
10 Hb_001205_290 0.1048972636 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
11 Hb_000962_060 0.1104378999 - - PREDICTED: uncharacterized protein LOC105646517 [Jatropha curcas]
12 Hb_001052_020 0.1154934114 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
13 Hb_128392_010 0.1157130961 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
14 Hb_002307_150 0.1159356808 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
15 Hb_001091_060 0.1176441244 - - hypothetical protein JCGZ_27062 [Jatropha curcas]
16 Hb_003055_160 0.1190650646 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
17 Hb_001856_210 0.1208190069 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
18 Hb_005701_100 0.1215295995 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
19 Hb_001971_040 0.1218392229 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
20 Hb_009545_060 0.1223673501 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]

Gene co-expression network

sample Hb_012092_040 Hb_012092_040 Hb_000089_090 Hb_000089_090 Hb_012092_040--Hb_000089_090 Hb_001247_060 Hb_001247_060 Hb_012092_040--Hb_001247_060 Hb_089140_070 Hb_089140_070 Hb_012092_040--Hb_089140_070 Hb_000035_230 Hb_000035_230 Hb_012092_040--Hb_000035_230 Hb_003464_010 Hb_003464_010 Hb_012092_040--Hb_003464_010 Hb_000390_010 Hb_000390_010 Hb_012092_040--Hb_000390_010 Hb_000089_090--Hb_001247_060 Hb_000089_090--Hb_000035_230 Hb_059502_010 Hb_059502_010 Hb_000089_090--Hb_059502_010 Hb_000089_090--Hb_003464_010 Hb_000962_060 Hb_000962_060 Hb_000089_090--Hb_000962_060 Hb_001247_060--Hb_000035_230 Hb_001247_060--Hb_059502_010 Hb_007304_020 Hb_007304_020 Hb_001247_060--Hb_007304_020 Hb_000531_010 Hb_000531_010 Hb_001247_060--Hb_000531_010 Hb_001971_040 Hb_001971_040 Hb_089140_070--Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_089140_070--Hb_006810_040 Hb_010080_050 Hb_010080_050 Hb_089140_070--Hb_010080_050 Hb_089140_070--Hb_000390_010 Hb_089140_070--Hb_000035_230 Hb_003847_060 Hb_003847_060 Hb_000035_230--Hb_003847_060 Hb_005398_050 Hb_005398_050 Hb_000035_230--Hb_005398_050 Hb_128392_010 Hb_128392_010 Hb_000035_230--Hb_128392_010 Hb_000445_260 Hb_000445_260 Hb_003464_010--Hb_000445_260 Hb_001329_050 Hb_001329_050 Hb_003464_010--Hb_001329_050 Hb_003464_010--Hb_010080_050 Hb_003464_010--Hb_000390_010 Hb_003464_010--Hb_000035_230 Hb_000390_010--Hb_000035_230 Hb_000390_010--Hb_001971_040 Hb_001950_090 Hb_001950_090 Hb_000390_010--Hb_001950_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.60011 87.3251 121.898 0.0604732 0.0229091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.08585 3.02728

CAGE analysis