Hb_012092_060

Information

Type -
Description -
Location Contig12092: 48356-53361
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12170g
description POPTRDRAFT_778532; hypothetical protein
nr
ID XP_012084723.1
description PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067K4J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19864 PE=4 SV=1
Gene Ontology
ID GO:0003723
description kh domain-containing protein at4g18375

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06446: 48346-52516 , PASA_asmbl_06448: 51413-51979 , PASA_asmbl_06450: 53262-53695
cDNA
(Sanger)
(ID:Location)		 040_H19.ab1: 48346-49155

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012092_060 0.0 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
2 Hb_003912_070 0.0492220241 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
3 Hb_000537_050 0.0598848986 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
4 Hb_005568_040 0.0612462583 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
5 Hb_012286_040 0.0629403051 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
6 Hb_000003_100 0.0636427728 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
7 Hb_011287_050 0.0683237017 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
8 Hb_061878_010 0.0703178293 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
9 Hb_140049_080 0.0703667769 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
10 Hb_000037_220 0.0708613003 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
11 Hb_000331_580 0.0718029906 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
12 Hb_003943_010 0.0722384897 - - conserved hypothetical protein [Ricinus communis]
13 Hb_011618_090 0.0726082516 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
14 Hb_007062_030 0.0729132505 - - hypothetical protein VITISV_039033 [Vitis vinifera]
15 Hb_031527_030 0.0731143212 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
16 Hb_041327_010 0.0731350914 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
17 Hb_005563_060 0.0736379512 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
18 Hb_001188_020 0.0741613016 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
19 Hb_004586_220 0.076298028 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
20 Hb_011849_040 0.0769400746 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012092_060 Hb_012092_060 Hb_003912_070 Hb_003912_070 Hb_012092_060--Hb_003912_070 Hb_000537_050 Hb_000537_050 Hb_012092_060--Hb_000537_050 Hb_005568_040 Hb_005568_040 Hb_012092_060--Hb_005568_040 Hb_012286_040 Hb_012286_040 Hb_012092_060--Hb_012286_040 Hb_000003_100 Hb_000003_100 Hb_012092_060--Hb_000003_100 Hb_011287_050 Hb_011287_050 Hb_012092_060--Hb_011287_050 Hb_003912_070--Hb_005568_040 Hb_003912_070--Hb_011287_050 Hb_000331_580 Hb_000331_580 Hb_003912_070--Hb_000331_580 Hb_043362_010 Hb_043362_010 Hb_003912_070--Hb_043362_010 Hb_000479_240 Hb_000479_240 Hb_003912_070--Hb_000479_240 Hb_004586_220 Hb_004586_220 Hb_000537_050--Hb_004586_220 Hb_000592_030 Hb_000592_030 Hb_000537_050--Hb_000592_030 Hb_020378_030 Hb_020378_030 Hb_000537_050--Hb_020378_030 Hb_009296_040 Hb_009296_040 Hb_000537_050--Hb_009296_040 Hb_002890_130 Hb_002890_130 Hb_000537_050--Hb_002890_130 Hb_005568_040--Hb_000479_240 Hb_004645_070 Hb_004645_070 Hb_005568_040--Hb_004645_070 Hb_005568_040--Hb_000331_580 Hb_000008_240 Hb_000008_240 Hb_005568_040--Hb_000008_240 Hb_004586_290 Hb_004586_290 Hb_005568_040--Hb_004586_290 Hb_031527_030 Hb_031527_030 Hb_012286_040--Hb_031527_030 Hb_002749_060 Hb_002749_060 Hb_012286_040--Hb_002749_060 Hb_041327_010 Hb_041327_010 Hb_012286_040--Hb_041327_010 Hb_012286_040--Hb_000003_100 Hb_012286_040--Hb_002890_130 Hb_003216_090 Hb_003216_090 Hb_000003_100--Hb_003216_090 Hb_000003_100--Hb_000331_580 Hb_000003_100--Hb_002890_130 Hb_005563_060 Hb_005563_060 Hb_000003_100--Hb_005563_060 Hb_000003_100--Hb_000008_240 Hb_001105_160 Hb_001105_160 Hb_011287_050--Hb_001105_160 Hb_011287_050--Hb_005568_040 Hb_061878_010 Hb_061878_010 Hb_011287_050--Hb_061878_010 Hb_000487_380 Hb_000487_380 Hb_011287_050--Hb_000487_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5084 24.1194 13.1015 18.8753 11.6435 21.0495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5156 7.59903 12.9013 22.7707 16.5042

CAGE analysis