Hb_012092_090

Information

Type -
Description -
Location Contig12092: 61051-61711
Sequence    

Annotation

kegg
ID rcu:RCOM_0299450
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012084727.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X2 [Jatropha curcas]
swissprot
ID Q9LXF4
description Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1
trembl
ID A0A067JT76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19865 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012092_090 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X2 [Jatropha curcas]
2 Hb_005162_140 0.175834478 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
3 Hb_114310_060 0.1771252711 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2G, putative [Ricinus communis]
4 Hb_002284_080 0.1810201361 - - protein with unknown function [Ricinus communis]
5 Hb_011618_100 0.1814249736 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
6 Hb_012423_060 0.1874097493 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
7 Hb_000123_220 0.1939475394 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
8 Hb_001486_200 0.1955477712 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
9 Hb_001381_060 0.1959905802 - - monoxygenase, putative [Ricinus communis]
10 Hb_025708_010 0.1994219575 - - hypothetical protein MTR_1g051060 [Medicago truncatula]
11 Hb_002343_010 0.2083726746 - - amino acid binding protein, putative [Ricinus communis]
12 Hb_011872_020 0.2164645579 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH128 [Jatropha curcas]
13 Hb_004680_010 0.2168211414 - - PREDICTED: uncharacterized protein LOC105636246 isoform X1 [Jatropha curcas]
14 Hb_014720_050 0.2180737705 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
15 Hb_000340_220 0.2186501675 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000123_240 0.219900176 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_002391_320 0.2278469021 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
18 Hb_004574_040 0.2282050381 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
19 Hb_000913_080 0.2287268178 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
20 Hb_001353_020 0.2325279564 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012092_090 Hb_012092_090 Hb_005162_140 Hb_005162_140 Hb_012092_090--Hb_005162_140 Hb_114310_060 Hb_114310_060 Hb_012092_090--Hb_114310_060 Hb_002284_080 Hb_002284_080 Hb_012092_090--Hb_002284_080 Hb_011618_100 Hb_011618_100 Hb_012092_090--Hb_011618_100 Hb_012423_060 Hb_012423_060 Hb_012092_090--Hb_012423_060 Hb_000123_220 Hb_000123_220 Hb_012092_090--Hb_000123_220 Hb_009862_020 Hb_009862_020 Hb_005162_140--Hb_009862_020 Hb_001474_050 Hb_001474_050 Hb_005162_140--Hb_001474_050 Hb_012762_040 Hb_012762_040 Hb_005162_140--Hb_012762_040 Hb_001250_080 Hb_001250_080 Hb_005162_140--Hb_001250_080 Hb_002343_010 Hb_002343_010 Hb_005162_140--Hb_002343_010 Hb_003687_130 Hb_003687_130 Hb_005162_140--Hb_003687_130 Hb_114310_060--Hb_005162_140 Hb_002759_260 Hb_002759_260 Hb_114310_060--Hb_002759_260 Hb_009189_050 Hb_009189_050 Hb_114310_060--Hb_009189_050 Hb_114310_060--Hb_012423_060 Hb_114310_060--Hb_002284_080 Hb_002000_090 Hb_002000_090 Hb_002284_080--Hb_002000_090 Hb_001433_160 Hb_001433_160 Hb_002284_080--Hb_001433_160 Hb_005054_020 Hb_005054_020 Hb_002284_080--Hb_005054_020 Hb_003710_020 Hb_003710_020 Hb_002284_080--Hb_003710_020 Hb_183086_070 Hb_183086_070 Hb_002284_080--Hb_183086_070 Hb_001353_020 Hb_001353_020 Hb_002284_080--Hb_001353_020 Hb_000913_080 Hb_000913_080 Hb_011618_100--Hb_000913_080 Hb_000813_160 Hb_000813_160 Hb_011618_100--Hb_000813_160 Hb_091889_020 Hb_091889_020 Hb_011618_100--Hb_091889_020 Hb_027654_080 Hb_027654_080 Hb_011618_100--Hb_027654_080 Hb_014720_050 Hb_014720_050 Hb_011618_100--Hb_014720_050 Hb_011618_100--Hb_002284_080 Hb_008747_010 Hb_008747_010 Hb_012423_060--Hb_008747_010 Hb_012423_060--Hb_002284_080 Hb_001381_060 Hb_001381_060 Hb_012423_060--Hb_001381_060 Hb_012423_060--Hb_011618_100 Hb_012423_060--Hb_002343_010 Hb_006120_150 Hb_006120_150 Hb_000123_220--Hb_006120_150 Hb_012340_060 Hb_012340_060 Hb_000123_220--Hb_012340_060 Hb_004680_010 Hb_004680_010 Hb_000123_220--Hb_004680_010 Hb_002042_170 Hb_002042_170 Hb_000123_220--Hb_002042_170 Hb_025708_010 Hb_025708_010 Hb_000123_220--Hb_025708_010 Hb_002027_030 Hb_002027_030 Hb_000123_220--Hb_002027_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0408297 0.208379 0.157048 0.211191 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0743841 0.130913 0.121713 0.144933

CAGE analysis