Hb_012092_100

Information

Type -
Description -
Location Contig12092: 62534-63448
Sequence    

Annotation

kegg
ID rcu:RCOM_0299440
description hypothetical protein
nr
ID XP_002533115.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9T4E6
description Casparian strip membrane protein 5 OS=Ricinus communis GN=RCOM_0299440 PE=3 SV=1
trembl
ID W9R0I2
description CASP-like protein OS=Morus notabilis GN=L484_013577 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casparian strip membrane protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06452: 62243-63249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012092_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008864_100 0.1998506299 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
3 Hb_000925_040 0.2217272303 - - kinase, putative [Ricinus communis]
4 Hb_002631_190 0.2236446644 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
5 Hb_000010_300 0.2253487311 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
6 Hb_006472_070 0.2480603774 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
7 Hb_006289_020 0.2548182266 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
8 Hb_001699_120 0.2585596211 - - Protein P21, putative [Ricinus communis]
9 Hb_002301_090 0.2701723659 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
10 Hb_003861_030 0.2728144788 - - hypothetical protein JCGZ_16321 [Jatropha curcas]
11 Hb_004452_090 0.2741064295 - - hypothetical protein JCGZ_12231 [Jatropha curcas]
12 Hb_000125_220 0.2741379905 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 13 [Jatropha curcas]
13 Hb_000820_160 0.274773152 - - -
14 Hb_012754_020 0.2749918006 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
15 Hb_000985_070 0.2765468448 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
16 Hb_007904_250 0.2773011772 - - PREDICTED: vignain-like [Jatropha curcas]
17 Hb_001016_140 0.2777946965 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
18 Hb_014068_020 0.2799279167 - - PREDICTED: uncharacterized protein LOC105628343 [Jatropha curcas]
19 Hb_000236_480 0.2851948795 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
20 Hb_002701_230 0.2864180184 - - PREDICTED: uncharacterized protein LOC105646833 [Jatropha curcas]

Gene co-expression network

sample Hb_012092_100 Hb_012092_100 Hb_008864_100 Hb_008864_100 Hb_012092_100--Hb_008864_100 Hb_000925_040 Hb_000925_040 Hb_012092_100--Hb_000925_040 Hb_002631_190 Hb_002631_190 Hb_012092_100--Hb_002631_190 Hb_000010_300 Hb_000010_300 Hb_012092_100--Hb_000010_300 Hb_006472_070 Hb_006472_070 Hb_012092_100--Hb_006472_070 Hb_006289_020 Hb_006289_020 Hb_012092_100--Hb_006289_020 Hb_008864_100--Hb_006289_020 Hb_003119_040 Hb_003119_040 Hb_008864_100--Hb_003119_040 Hb_003878_060 Hb_003878_060 Hb_008864_100--Hb_003878_060 Hb_000236_480 Hb_000236_480 Hb_008864_100--Hb_000236_480 Hb_000260_610 Hb_000260_610 Hb_008864_100--Hb_000260_610 Hb_000925_040--Hb_000010_300 Hb_015475_010 Hb_015475_010 Hb_000925_040--Hb_015475_010 Hb_000925_040--Hb_002631_190 Hb_000320_260 Hb_000320_260 Hb_000925_040--Hb_000320_260 Hb_000302_210 Hb_000302_210 Hb_000925_040--Hb_000302_210 Hb_002631_190--Hb_008864_100 Hb_002631_190--Hb_000010_300 Hb_001493_160 Hb_001493_160 Hb_002631_190--Hb_001493_160 Hb_002301_090 Hb_002301_090 Hb_002631_190--Hb_002301_090 Hb_000010_300--Hb_000320_260 Hb_009571_010 Hb_009571_010 Hb_000010_300--Hb_009571_010 Hb_004452_090 Hb_004452_090 Hb_000010_300--Hb_004452_090 Hb_000086_670 Hb_000086_670 Hb_000010_300--Hb_000086_670 Hb_000010_300--Hb_006472_070 Hb_000010_300--Hb_006289_020 Hb_004193_010 Hb_004193_010 Hb_006472_070--Hb_004193_010 Hb_001016_140 Hb_001016_140 Hb_006472_070--Hb_001016_140 Hb_006472_080 Hb_006472_080 Hb_006472_070--Hb_006472_080 Hb_001085_150 Hb_001085_150 Hb_006472_070--Hb_001085_150 Hb_006472_070--Hb_000320_260 Hb_002965_160 Hb_002965_160 Hb_006289_020--Hb_002965_160 Hb_006289_020--Hb_003878_060 Hb_006289_020--Hb_000236_480 Hb_008725_070 Hb_008725_070 Hb_006289_020--Hb_008725_070 Hb_000960_090 Hb_000960_090 Hb_006289_020--Hb_000960_090 Hb_000288_090 Hb_000288_090 Hb_006289_020--Hb_000288_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.051348 0.102932 0.41206 0.161922 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.130093 0.0604199 0

CAGE analysis