Hb_012098_080

Information

Type -
Description -
Location Contig12098: 60588-64490
Sequence    

Annotation

kegg
ID rcu:RCOM_0065580
description KOM, putative
nr
ID XP_002531417.1
description KOM, putative [Ricinus communis]
swissprot
ID P54493
description Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2
trembl
ID B9SZJ8
description KOM, putative OS=Ricinus communis GN=RCOM_0065580 PE=4 SV=1
Gene Ontology
ID GO:0016021
description rhomboid-like protease 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06455: 60671-64453 , PASA_asmbl_06456: 61165-61589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_080 0.0 - - KOM, putative [Ricinus communis]
2 Hb_105123_010 0.0755943066 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
3 Hb_155159_030 0.079874352 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
4 Hb_166222_010 0.0879063601 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
5 Hb_002496_010 0.089666537 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
6 Hb_001301_100 0.0897197428 - - transporter, putative [Ricinus communis]
7 Hb_000922_410 0.0906803338 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
8 Hb_001959_210 0.0910995891 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
9 Hb_015934_070 0.0919583881 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
10 Hb_027472_150 0.0939872003 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
11 Hb_127552_030 0.0959722876 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
12 Hb_001009_170 0.0972271272 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_000111_420 0.1005236881 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
14 Hb_002044_150 0.10079008 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
15 Hb_007044_140 0.1015774069 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
16 Hb_031340_050 0.104177872 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
17 Hb_001545_080 0.104467804 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
18 Hb_002728_070 0.1054252687 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
19 Hb_001579_220 0.105637204 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
20 Hb_000599_300 0.1059014278 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]

Gene co-expression network

sample Hb_012098_080 Hb_012098_080 Hb_105123_010 Hb_105123_010 Hb_012098_080--Hb_105123_010 Hb_155159_030 Hb_155159_030 Hb_012098_080--Hb_155159_030 Hb_166222_010 Hb_166222_010 Hb_012098_080--Hb_166222_010 Hb_002496_010 Hb_002496_010 Hb_012098_080--Hb_002496_010 Hb_001301_100 Hb_001301_100 Hb_012098_080--Hb_001301_100 Hb_000922_410 Hb_000922_410 Hb_012098_080--Hb_000922_410 Hb_105123_010--Hb_155159_030 Hb_127552_030 Hb_127552_030 Hb_105123_010--Hb_127552_030 Hb_032258_030 Hb_032258_030 Hb_105123_010--Hb_032258_030 Hb_000861_020 Hb_000861_020 Hb_105123_010--Hb_000861_020 Hb_022693_060 Hb_022693_060 Hb_105123_010--Hb_022693_060 Hb_155159_030--Hb_127552_030 Hb_015934_070 Hb_015934_070 Hb_155159_030--Hb_015934_070 Hb_155159_030--Hb_032258_030 Hb_025240_040 Hb_025240_040 Hb_155159_030--Hb_025240_040 Hb_001579_220 Hb_001579_220 Hb_155159_030--Hb_001579_220 Hb_002271_030 Hb_002271_030 Hb_166222_010--Hb_002271_030 Hb_003226_180 Hb_003226_180 Hb_166222_010--Hb_003226_180 Hb_003376_400 Hb_003376_400 Hb_166222_010--Hb_003376_400 Hb_000032_280 Hb_000032_280 Hb_166222_010--Hb_000032_280 Hb_000111_420 Hb_000111_420 Hb_166222_010--Hb_000111_420 Hb_000976_300 Hb_000976_300 Hb_002496_010--Hb_000976_300 Hb_007479_040 Hb_007479_040 Hb_002496_010--Hb_007479_040 Hb_000028_480 Hb_000028_480 Hb_002496_010--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_002496_010--Hb_002849_100 Hb_002044_150 Hb_002044_150 Hb_002496_010--Hb_002044_150 Hb_002600_150 Hb_002600_150 Hb_002496_010--Hb_002600_150 Hb_001442_040 Hb_001442_040 Hb_001301_100--Hb_001442_040 Hb_003847_130 Hb_003847_130 Hb_001301_100--Hb_003847_130 Hb_001301_100--Hb_002044_150 Hb_004846_220 Hb_004846_220 Hb_001301_100--Hb_004846_220 Hb_007317_140 Hb_007317_140 Hb_001301_100--Hb_007317_140 Hb_002592_060 Hb_002592_060 Hb_001301_100--Hb_002592_060 Hb_002728_070 Hb_002728_070 Hb_000922_410--Hb_002728_070 Hb_000025_470 Hb_000025_470 Hb_000922_410--Hb_000025_470 Hb_000638_120 Hb_000638_120 Hb_000922_410--Hb_000638_120 Hb_000139_370 Hb_000139_370 Hb_000922_410--Hb_000139_370 Hb_009467_060 Hb_009467_060 Hb_000922_410--Hb_009467_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.27752 2.67573 5.51251 5.62291 10.004 12.1888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7909 8.70615 9.68445 11.6356 10.4456

CAGE analysis