Hb_012098_090

Information

Type transcription factor
Description TF Family: M-type
Location Contig12098: 64891-65886
Sequence    

Annotation

kegg
ID rcu:RCOM_0065570
description mads box protein, putative
nr
ID XP_002531416.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q7X9H9
description Agamous-like MADS-box protein AGL93 OS=Arabidopsis thaliana GN=AGL93 PE=2 SV=1
trembl
ID B9SZJ7
description Mads box protein, putative OS=Ricinus communis GN=RCOM_0065570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_090 0.0 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
2 Hb_001411_040 0.2779496447 - - hypothetical protein VITISV_010644 [Vitis vinifera]
3 Hb_007254_030 0.2854749374 - - kinase, putative [Ricinus communis]
4 Hb_000099_140 0.3065737578 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
5 Hb_000116_070 0.3093971695 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22381 [Jatropha curcas]
6 Hb_000416_030 0.3161795801 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
7 Hb_000608_430 0.3181236206 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
8 Hb_141881_010 0.3230749426 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000402_100 0.3233656117 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
10 Hb_000523_110 0.3297481506 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
11 Hb_003540_100 0.3361568124 - - ATP-binding cassette transporter, putative [Ricinus communis]
12 Hb_004125_120 0.3421222841 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_001439_020 0.343738902 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
14 Hb_000879_230 0.3462846664 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
15 Hb_002253_090 0.3466402241 - - Chitinase 1 precursor, putative [Ricinus communis]
16 Hb_053272_010 0.3486621503 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
17 Hb_001098_030 0.3527528361 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
18 Hb_003181_060 0.3542461416 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
19 Hb_010175_010 0.3582465237 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000107_180 0.3584513719 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]

Gene co-expression network

sample Hb_012098_090 Hb_012098_090 Hb_001411_040 Hb_001411_040 Hb_012098_090--Hb_001411_040 Hb_007254_030 Hb_007254_030 Hb_012098_090--Hb_007254_030 Hb_000099_140 Hb_000099_140 Hb_012098_090--Hb_000099_140 Hb_000116_070 Hb_000116_070 Hb_012098_090--Hb_000116_070 Hb_000416_030 Hb_000416_030 Hb_012098_090--Hb_000416_030 Hb_000608_430 Hb_000608_430 Hb_012098_090--Hb_000608_430 Hb_001755_030 Hb_001755_030 Hb_001411_040--Hb_001755_030 Hb_000402_100 Hb_000402_100 Hb_001411_040--Hb_000402_100 Hb_001405_140 Hb_001405_140 Hb_001411_040--Hb_001405_140 Hb_000879_230 Hb_000879_230 Hb_001411_040--Hb_000879_230 Hb_001294_030 Hb_001294_030 Hb_001411_040--Hb_001294_030 Hb_007632_170 Hb_007632_170 Hb_001411_040--Hb_007632_170 Hb_007254_030--Hb_000416_030 Hb_001098_030 Hb_001098_030 Hb_007254_030--Hb_001098_030 Hb_000523_110 Hb_000523_110 Hb_007254_030--Hb_000523_110 Hb_004648_110 Hb_004648_110 Hb_007254_030--Hb_004648_110 Hb_003687_220 Hb_003687_220 Hb_007254_030--Hb_003687_220 Hb_053272_010 Hb_053272_010 Hb_000099_140--Hb_053272_010 Hb_000005_140 Hb_000005_140 Hb_000099_140--Hb_000005_140 Hb_069338_010 Hb_069338_010 Hb_000099_140--Hb_069338_010 Hb_002119_140 Hb_002119_140 Hb_000099_140--Hb_002119_140 Hb_002876_340 Hb_002876_340 Hb_000099_140--Hb_002876_340 Hb_022092_080 Hb_022092_080 Hb_000099_140--Hb_022092_080 Hb_002253_090 Hb_002253_090 Hb_000116_070--Hb_002253_090 Hb_002540_050 Hb_002540_050 Hb_000116_070--Hb_002540_050 Hb_000116_070--Hb_000608_430 Hb_000272_040 Hb_000272_040 Hb_000116_070--Hb_000272_040 Hb_000116_070--Hb_001411_040 Hb_004088_050 Hb_004088_050 Hb_000116_070--Hb_004088_050 Hb_012490_020 Hb_012490_020 Hb_000416_030--Hb_012490_020 Hb_000416_030--Hb_000523_110 Hb_000416_030--Hb_003687_220 Hb_000622_080 Hb_000622_080 Hb_000416_030--Hb_000622_080 Hb_000191_080 Hb_000191_080 Hb_000416_030--Hb_000191_080 Hb_004125_120 Hb_004125_120 Hb_000608_430--Hb_004125_120 Hb_019837_020 Hb_019837_020 Hb_000608_430--Hb_019837_020 Hb_114271_010 Hb_114271_010 Hb_000608_430--Hb_114271_010 Hb_142663_020 Hb_142663_020 Hb_000608_430--Hb_142663_020 Hb_032260_110 Hb_032260_110 Hb_000608_430--Hb_032260_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0444707 0 0.0333081 0.0559316 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.120168 0 0.0161099 0.0819212

CAGE analysis