Hb_012098_100

Information

Type -
Description -
Location Contig12098: 66315-68492
Sequence    

Annotation

kegg
ID rcu:RCOM_0065560
description zinc finger protein, putative
nr
ID XP_002531415.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID B9SZJ6
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0065560 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_100 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000881_020 0.0297185407 - - hypothetical protein MIMGU_mgv1a022110mg, partial [Erythranthe guttata]
3 Hb_000042_280 0.0578016738 - - chlorophyll A/B binding protein, putative [Ricinus communis]
4 Hb_001158_130 0.0592791798 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
5 Hb_001488_230 0.0612438602 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
6 Hb_189208_070 0.065809295 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]
7 Hb_009588_010 0.0785978338 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
8 Hb_002028_020 0.0804568408 - - acyltransferase, putative [Ricinus communis]
9 Hb_004223_150 0.0832811109 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
10 Hb_000608_270 0.0838082518 - - conserved hypothetical protein [Ricinus communis]
11 Hb_149644_030 0.0839888575 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
12 Hb_000538_090 0.0843745832 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
13 Hb_143629_180 0.085335289 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
14 Hb_000418_130 0.0855590143 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
15 Hb_004635_120 0.0880681225 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
16 Hb_034235_010 0.0907785619 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_002078_330 0.0921546943 - - lipid binding protein, putative [Ricinus communis]
18 Hb_041433_010 0.0923493138 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_000058_180 0.0925764636 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
20 Hb_002043_020 0.099235685 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]

Gene co-expression network

sample Hb_012098_100 Hb_012098_100 Hb_000881_020 Hb_000881_020 Hb_012098_100--Hb_000881_020 Hb_000042_280 Hb_000042_280 Hb_012098_100--Hb_000042_280 Hb_001158_130 Hb_001158_130 Hb_012098_100--Hb_001158_130 Hb_001488_230 Hb_001488_230 Hb_012098_100--Hb_001488_230 Hb_189208_070 Hb_189208_070 Hb_012098_100--Hb_189208_070 Hb_009588_010 Hb_009588_010 Hb_012098_100--Hb_009588_010 Hb_000881_020--Hb_001158_130 Hb_000881_020--Hb_000042_280 Hb_004223_150 Hb_004223_150 Hb_000881_020--Hb_004223_150 Hb_000881_020--Hb_189208_070 Hb_004635_120 Hb_004635_120 Hb_000881_020--Hb_004635_120 Hb_000042_280--Hb_001488_230 Hb_000418_130 Hb_000418_130 Hb_000042_280--Hb_000418_130 Hb_002028_020 Hb_002028_020 Hb_000042_280--Hb_002028_020 Hb_000042_280--Hb_009588_010 Hb_149644_030 Hb_149644_030 Hb_000042_280--Hb_149644_030 Hb_001158_130--Hb_189208_070 Hb_000684_070 Hb_000684_070 Hb_001158_130--Hb_000684_070 Hb_001158_130--Hb_000042_280 Hb_001199_110 Hb_001199_110 Hb_001158_130--Hb_001199_110 Hb_001488_230--Hb_002028_020 Hb_001488_230--Hb_009588_010 Hb_001488_230--Hb_000418_130 Hb_001488_230--Hb_149644_030 Hb_004032_400 Hb_004032_400 Hb_001488_230--Hb_004032_400 Hb_000538_090 Hb_000538_090 Hb_189208_070--Hb_000538_090 Hb_189208_070--Hb_009588_010 Hb_012395_240 Hb_012395_240 Hb_189208_070--Hb_012395_240 Hb_009588_010--Hb_002028_020 Hb_009588_010--Hb_000418_130 Hb_009588_010--Hb_004032_400 Hb_003734_070 Hb_003734_070 Hb_009588_010--Hb_003734_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0438654 0.593697 0.426379 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.589379

CAGE analysis