Hb_012098_160

Information

Type -
Description -
Location Contig12098: 99153-100659
Sequence    

Annotation

kegg
ID rcu:RCOM_1411110
description Protein P21, putative
nr
ID XP_012071359.1
description PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
swissprot
ID P28493
description Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1
trembl
ID A0A067KRY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05044 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06461: 99162-99876 , PASA_asmbl_06462: 100067-100512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_160 0.0 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
2 Hb_000270_380 0.0659100369 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
3 Hb_007163_100 0.0670861444 - - BnaC03g52280D [Brassica napus]
4 Hb_009023_010 0.0740922741 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
5 Hb_001486_280 0.0743341874 - - hypothetical protein RCOM_1321910 [Ricinus communis]
6 Hb_000904_120 0.0756683262 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015561_010 0.082637184 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012484_050 0.0849310604 - - PREDICTED: kinesin KP1 [Jatropha curcas]
9 Hb_005694_160 0.0855189431 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005762_010 0.0873277389 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
11 Hb_000012_330 0.0873880204 - - pollen specific protein sf21, putative [Ricinus communis]
12 Hb_001032_020 0.0887856289 - - ankyrin repeat protein [Bruguiera gymnorhiza]
13 Hb_003339_010 0.0899078536 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
14 Hb_000622_050 0.0919937366 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002066_110 0.0923478017 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
16 Hb_008054_030 0.0925587565 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
17 Hb_002150_090 0.0970047727 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
18 Hb_000617_360 0.0972482719 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000718_060 0.0977272597 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
20 Hb_001512_130 0.100092058 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]

Gene co-expression network

sample Hb_012098_160 Hb_012098_160 Hb_000270_380 Hb_000270_380 Hb_012098_160--Hb_000270_380 Hb_007163_100 Hb_007163_100 Hb_012098_160--Hb_007163_100 Hb_009023_010 Hb_009023_010 Hb_012098_160--Hb_009023_010 Hb_001486_280 Hb_001486_280 Hb_012098_160--Hb_001486_280 Hb_000904_120 Hb_000904_120 Hb_012098_160--Hb_000904_120 Hb_015561_010 Hb_015561_010 Hb_012098_160--Hb_015561_010 Hb_000270_380--Hb_009023_010 Hb_000270_380--Hb_001486_280 Hb_000270_380--Hb_015561_010 Hb_001512_130 Hb_001512_130 Hb_000270_380--Hb_001512_130 Hb_000336_290 Hb_000336_290 Hb_000270_380--Hb_000336_290 Hb_002150_090 Hb_002150_090 Hb_007163_100--Hb_002150_090 Hb_008054_030 Hb_008054_030 Hb_007163_100--Hb_008054_030 Hb_000028_190 Hb_000028_190 Hb_007163_100--Hb_000028_190 Hb_003339_010 Hb_003339_010 Hb_007163_100--Hb_003339_010 Hb_001095_020 Hb_001095_020 Hb_007163_100--Hb_001095_020 Hb_009023_010--Hb_015561_010 Hb_005762_010 Hb_005762_010 Hb_009023_010--Hb_005762_010 Hb_002062_010 Hb_002062_010 Hb_009023_010--Hb_002062_010 Hb_009023_010--Hb_001512_130 Hb_001486_280--Hb_009023_010 Hb_002485_010 Hb_002485_010 Hb_001486_280--Hb_002485_010 Hb_001486_280--Hb_000904_120 Hb_012484_050 Hb_012484_050 Hb_001486_280--Hb_012484_050 Hb_000031_180 Hb_000031_180 Hb_000904_120--Hb_000031_180 Hb_000904_120--Hb_007163_100 Hb_000904_120--Hb_015561_010 Hb_000329_780 Hb_000329_780 Hb_000904_120--Hb_000329_780 Hb_002119_100 Hb_002119_100 Hb_000904_120--Hb_002119_100 Hb_015561_010--Hb_002062_010 Hb_015561_010--Hb_001512_130 Hb_015561_010--Hb_002119_100 Hb_003417_050 Hb_003417_050 Hb_015561_010--Hb_003417_050 Hb_007483_090 Hb_007483_090 Hb_015561_010--Hb_007483_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0970008 0.909461 3.77434 6.35259 0.0584523 0.0415658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0349427 0 0.182239 4.96774

CAGE analysis