Hb_012098_180

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig12098: 113400-123423
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20590g
description NBS-LRR resistance gene-like protein ARGH30
nr
ID KDP27350.1
description hypothetical protein JCGZ_20174 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067K520
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20174 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06463: 121220-121337 , PASA_asmbl_06465: 122410-122728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_180 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
2 Hb_001538_050 0.0906766585 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
3 Hb_000237_070 0.0973511331 - - Purple acid phosphatase precursor, putative [Ricinus communis]
4 Hb_000522_130 0.1002295685 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
5 Hb_003914_050 0.1002732828 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
6 Hb_002890_320 0.1089721903 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
7 Hb_001123_170 0.1139341343 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001515_030 0.1141346627 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_001377_130 0.118020197 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
10 Hb_004837_110 0.1189812175 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
11 Hb_167272_010 0.120386382 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
12 Hb_000382_030 0.121058487 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
13 Hb_002783_140 0.1217925326 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
14 Hb_003905_040 0.1219600628 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
15 Hb_005867_030 0.1223453919 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
16 Hb_003656_170 0.1258277345 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
17 Hb_000318_050 0.1265666899 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
18 Hb_000094_010 0.1274886947 - - lrr receptor protein kinase, putative [Ricinus communis]
19 Hb_008040_060 0.131078374 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
20 Hb_000771_070 0.1335887535 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_012098_180 Hb_012098_180 Hb_001538_050 Hb_001538_050 Hb_012098_180--Hb_001538_050 Hb_000237_070 Hb_000237_070 Hb_012098_180--Hb_000237_070 Hb_000522_130 Hb_000522_130 Hb_012098_180--Hb_000522_130 Hb_003914_050 Hb_003914_050 Hb_012098_180--Hb_003914_050 Hb_002890_320 Hb_002890_320 Hb_012098_180--Hb_002890_320 Hb_001123_170 Hb_001123_170 Hb_012098_180--Hb_001123_170 Hb_001538_050--Hb_000522_130 Hb_001538_050--Hb_000237_070 Hb_001538_050--Hb_001123_170 Hb_001377_130 Hb_001377_130 Hb_001538_050--Hb_001377_130 Hb_000382_030 Hb_000382_030 Hb_001538_050--Hb_000382_030 Hb_031862_020 Hb_031862_020 Hb_000237_070--Hb_031862_020 Hb_000237_070--Hb_000382_030 Hb_167272_010 Hb_167272_010 Hb_000237_070--Hb_167272_010 Hb_005867_030 Hb_005867_030 Hb_000237_070--Hb_005867_030 Hb_000318_050 Hb_000318_050 Hb_000237_070--Hb_000318_050 Hb_000237_070--Hb_001377_130 Hb_033312_090 Hb_033312_090 Hb_000522_130--Hb_033312_090 Hb_000522_130--Hb_003914_050 Hb_008040_060 Hb_008040_060 Hb_000522_130--Hb_008040_060 Hb_000705_130 Hb_000705_130 Hb_000522_130--Hb_000705_130 Hb_002529_080 Hb_002529_080 Hb_003914_050--Hb_002529_080 Hb_000094_010 Hb_000094_010 Hb_003914_050--Hb_000094_010 Hb_003914_050--Hb_008040_060 Hb_008667_030 Hb_008667_030 Hb_003914_050--Hb_008667_030 Hb_000027_060 Hb_000027_060 Hb_003914_050--Hb_000027_060 Hb_004837_110 Hb_004837_110 Hb_002890_320--Hb_004837_110 Hb_007102_010 Hb_007102_010 Hb_002890_320--Hb_007102_010 Hb_005569_030 Hb_005569_030 Hb_002890_320--Hb_005569_030 Hb_000313_100 Hb_000313_100 Hb_002890_320--Hb_000313_100 Hb_002890_320--Hb_000237_070 Hb_003656_170 Hb_003656_170 Hb_001123_170--Hb_003656_170 Hb_001123_170--Hb_001377_130 Hb_004544_090 Hb_004544_090 Hb_001123_170--Hb_004544_090 Hb_001123_170--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_002078_250 Hb_002078_250 Hb_001123_170--Hb_002078_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0253366 3.94725 1.91975 1.35406 0.00633971 0.00586805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0574516 0.0113025 0.0648728 1.25514 1.10948

CAGE analysis