Hb_012107_060

Information

Type -
Description -
Location Contig12107: 50811-55414
Sequence    

Annotation

kegg
ID cit:102624560
description protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like
nr
ID KDP45571.1
description hypothetical protein JCGZ_17178 [Jatropha curcas]
swissprot
ID C4B7M7
description Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=1
trembl
ID A0A067LAS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17178 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06486: 51815-52237 , PASA_asmbl_06487: 53298-53870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012107_060 0.0 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
2 Hb_004324_090 0.0750810511 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
3 Hb_000069_420 0.0791169569 - - Beclin-1, putative [Ricinus communis]
4 Hb_004994_140 0.0794038121 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]
5 Hb_158445_010 0.0816589931 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
6 Hb_002878_020 0.0855378138 - - mitochondrial carrier protein, putative [Ricinus communis]
7 Hb_000250_060 0.0902265932 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
8 Hb_000327_060 0.0974275926 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
9 Hb_000679_090 0.0985329736 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
10 Hb_012019_010 0.0990016423 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
11 Hb_001030_020 0.1019710945 - - Poly(A) polymerase alpha, putative [Ricinus communis]
12 Hb_000732_130 0.1029869933 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
13 Hb_009803_050 0.1032579891 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
14 Hb_000107_160 0.1052267523 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
15 Hb_027380_050 0.1057192661 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
16 Hb_001766_060 0.1058284395 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005162_060 0.1059985862 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
18 Hb_001825_060 0.106763727 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
19 Hb_000696_150 0.1068599002 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
20 Hb_010812_120 0.1069941208 - - hypothetical protein JCGZ_03293 [Jatropha curcas]

Gene co-expression network

sample Hb_012107_060 Hb_012107_060 Hb_004324_090 Hb_004324_090 Hb_012107_060--Hb_004324_090 Hb_000069_420 Hb_000069_420 Hb_012107_060--Hb_000069_420 Hb_004994_140 Hb_004994_140 Hb_012107_060--Hb_004994_140 Hb_158445_010 Hb_158445_010 Hb_012107_060--Hb_158445_010 Hb_002878_020 Hb_002878_020 Hb_012107_060--Hb_002878_020 Hb_000250_060 Hb_000250_060 Hb_012107_060--Hb_000250_060 Hb_004324_090--Hb_158445_010 Hb_000310_020 Hb_000310_020 Hb_004324_090--Hb_000310_020 Hb_163256_020 Hb_163256_020 Hb_004324_090--Hb_163256_020 Hb_004324_090--Hb_000069_420 Hb_006615_240 Hb_006615_240 Hb_004324_090--Hb_006615_240 Hb_000856_010 Hb_000856_010 Hb_004324_090--Hb_000856_010 Hb_000069_420--Hb_004994_140 Hb_003994_260 Hb_003994_260 Hb_000069_420--Hb_003994_260 Hb_005846_040 Hb_005846_040 Hb_000069_420--Hb_005846_040 Hb_000069_420--Hb_000250_060 Hb_001633_210 Hb_001633_210 Hb_000069_420--Hb_001633_210 Hb_007416_320 Hb_007416_320 Hb_004994_140--Hb_007416_320 Hb_003376_350 Hb_003376_350 Hb_004994_140--Hb_003376_350 Hb_004994_140--Hb_005846_040 Hb_000062_220 Hb_000062_220 Hb_004994_140--Hb_000062_220 Hb_000327_060 Hb_000327_060 Hb_158445_010--Hb_000327_060 Hb_005162_060 Hb_005162_060 Hb_158445_010--Hb_005162_060 Hb_004143_150 Hb_004143_150 Hb_158445_010--Hb_004143_150 Hb_158445_010--Hb_000310_020 Hb_158445_010--Hb_163256_020 Hb_002878_020--Hb_000250_060 Hb_009803_050 Hb_009803_050 Hb_002878_020--Hb_009803_050 Hb_011214_020 Hb_011214_020 Hb_002878_020--Hb_011214_020 Hb_086639_030 Hb_086639_030 Hb_002878_020--Hb_086639_030 Hb_001959_190 Hb_001959_190 Hb_002878_020--Hb_001959_190 Hb_002878_020--Hb_001633_210 Hb_000250_060--Hb_001633_210 Hb_005539_280 Hb_005539_280 Hb_000250_060--Hb_005539_280 Hb_001726_020 Hb_001726_020 Hb_000250_060--Hb_001726_020 Hb_000297_010 Hb_000297_010 Hb_000250_060--Hb_000297_010 Hb_010812_120 Hb_010812_120 Hb_000250_060--Hb_010812_120 Hb_002046_180 Hb_002046_180 Hb_000250_060--Hb_002046_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63172 3.7856 1.93011 1.69247 2.03575 1.72121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.19633 5.84982 4.12009 2.41303 2.34193

CAGE analysis